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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29694740	T-A	HET	INTERGENIC
SBS	Chr2	20133460	C-T	HET	INTERGENIC
SBS	Chr3	16372739	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g28420
SBS	Chr4	24954339	T-C	HET	INTERGENIC
SBS	Chr5	8734258	T-C	HET	INTERGENIC
SBS	Chr5	9505843	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16720
SBS	Chr5	9505844	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16720
SBS	Chr5	10087598	C-T	HET	INTERGENIC
SBS	Chr5	19677775	C-T	HOMO	INTERGENIC
SBS	Chr6	10649153	C-T	HET	INTERGENIC
SBS	Chr6	20615428	G-C	HOMO	INTERGENIC
SBS	Chr7	3355253	C-T	HET	INTERGENIC
SBS	Chr7	6460535	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11680
SBS	Chr7	11160311	A-T	HET	INTERGENIC
SBS	Chr8	2309999	G-A	HET	UTR_3_PRIME
SBS	Chr8	11113102	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18120
SBS	Chr8	12007088	T-C	HOMO	INTERGENIC
SBS	Chr9	18500028	A-T	HET	INTRON
SBS	Chr9	18500029	C-T	HET	INTRON
SBS	Chr10	132183	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01200
SBS	Chr10	170555	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01260
SBS	Chr10	2961883	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g05870
SBS	Chr10	2961885	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	3018370	G-A	HOMO	INTERGENIC
SBS	Chr10	12916684	T-C	HOMO	INTERGENIC
SBS	Chr10	18422439	A-G	HET	INTRON
SBS	Chr11	5388829	C-T	HET	INTERGENIC
SBS	Chr11	11011495	T-A	HET	INTERGENIC
SBS	Chr11	15792451	T-A	HET	INTERGENIC
SBS	Chr11	15952487	A-T	HET	INTERGENIC
SBS	Chr12	15016180	C-T	HET	INTERGENIC
SBS	Chr12	23908839	C-T	HOMO	INTERGENIC

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2551382	2551390	8
Deletion	Chr5	7213358	7213370	12	LOC_Os05g12570
Deletion	Chr9	8309739	8309743	4
Deletion	Chr2	8994245	8994246	1	LOC_Os02g15890
Deletion	Chr10	14633002	14633003	1	LOC_Os10g28180
Deletion	Chr1	15797001	16042000	245000	43
Deletion	Chr7	20400207	20400216	9
Deletion	Chr6	20448017	20448018	1
Deletion	Chr11	20839001	20936000	97000	15
Deletion	Chr6	29557513	29557516	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	32187645	32187645	1
Insertion	Chr3	3881802	3881803	2
Insertion	Chr4	11662523	11662526	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2583392	3529328

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	15926951	Chr2	31158566
Translocation	Chr10	15927291	Chr2	31158565

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