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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN951-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN951-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12659028	C-A	HOMO	INTERGENIC
SBS	Chr1	16375189	A-C	HOMO	INTERGENIC
SBS	Chr1	18843691	G-A	HOMO	INTERGENIC
SBS	Chr1	19569117	G-A	HOMO	INTERGENIC
SBS	Chr1	21254776	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g37940
SBS	Chr1	24798578	C-T	HET	INTERGENIC
SBS	Chr1	25018099	C-T	HET	INTERGENIC
SBS	Chr1	25018100	C-T	HET	INTERGENIC
SBS	Chr1	36510792	A-G	HET	INTERGENIC
SBS	Chr1	5254442	C-T	HOMO	INTERGENIC
SBS	Chr10	19245918	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	2835352	G-A	HET	INTERGENIC
SBS	Chr12	19642123	G-T	HOMO	INTERGENIC
SBS	Chr12	25739626	C-T	HET	INTRON
SBS	Chr2	12149827	C-A	HET	INTERGENIC
SBS	Chr2	20065538	A-C	HET	INTERGENIC
SBS	Chr3	15945220	C-T	HET	INTERGENIC
SBS	Chr3	33672978	C-G	HOMO	INTERGENIC
SBS	Chr3	34087463	C-G	HET	INTERGENIC
SBS	Chr4	26470267	C-T	HET	INTERGENIC
SBS	Chr5	14029818	T-C	HOMO	INTERGENIC
SBS	Chr5	1907146	A-C	HOMO	INTERGENIC
SBS	Chr5	20543553	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g34640
SBS	Chr5	28202319	A-T	HET	UTR_3_PRIME
SBS	Chr5	29097831	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g50750
SBS	Chr5	29384407	A-C	HET	UTR_3_PRIME
SBS	Chr5	9053684	C-A	HET	INTERGENIC
SBS	Chr6	4681255	A-G	HET	INTERGENIC
SBS	Chr6	4681259	A-G	HET	INTERGENIC
SBS	Chr6	6284035	T-C	HET	INTERGENIC
SBS	Chr7	22676948	G-T	HET	INTERGENIC
SBS	Chr7	28600239	C-T	HET	INTERGENIC
SBS	Chr7	7975603	T-C	HET	INTRON
SBS	Chr8	13879826	C-T	HOMO	INTERGENIC
SBS	Chr8	5881609	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10140
SBS	Chr8	9463745	G-A	HET	INTERGENIC
SBS	Chr9	21977445	C-A	HET	INTERGENIC
SBS	Chr9	21977446	C-T	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	123387	123389	2	LOC_Os04g01160
Deletion	Chr4	1838998	1839019	21	LOC_Os04g03990
Deletion	Chr4	3412644	3412652	8
Deletion	Chr7	8209940	8209968	28
Deletion	Chr1	10976656	10976659	3
Deletion	Chr3	11816052	11816054	2
Deletion	Chr2	11987552	11987563	11
Deletion	Chr12	13724960	13724961	1	LOC_Os12g24120
Deletion	Chr5	13863292	13863295	3
Deletion	Chr6	15555237	15555241	4
Deletion	Chr6	15720339	15720342	3
Deletion	Chr3	17835643	17835652	9
Deletion	Chr2	18902333	18906015	3682	3
Deletion	Chr8	19461253	19461280	27
Deletion	Chr5	21079001	21120000	41000	6
Deletion	Chr1	21311001	21428000	117000	16
Deletion	Chr8	24994811	24994812	1
Deletion	Chr3	25079997	25079998	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	12555072	12555073	2
Insertion	Chr8	25824153	25824154	2
Insertion	Chr8	8657538	8657538	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	969301	969439
Inversion	Chr11	9134393	27265439

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1474536	Chr10	19565345	LOC_Os11g03760
Translocation	Chr11	1475413	Chr10	19565327	LOC_Os11g03760
Translocation	Chr6	4846178	Chr5	21119986	LOC_Os06g09540
Translocation	Chr8	21008272	Chr4	29771154	LOC_Os04g49920
Translocation	Chr8	23577081	Chr6	4841834	LOC_Os08g37310
Translocation	Chr8	23577093	Chr5	21120312	2

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