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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17721288	C-A	HOMO	INTERGENIC
SBS	Chr1	27316439	T-C	HOMO	INTERGENIC
SBS	Chr1	3947511	T-G	HET	INTERGENIC
SBS	Chr1	40789897	T-A	HET	INTRON
SBS	Chr1	41027212	C-A	HET	INTERGENIC
SBS	Chr10	10006203	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	26623013	C-A	HET	INTERGENIC
SBS	Chr12	17452361	C-T	HET	INTERGENIC
SBS	Chr12	3756811	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g07540
SBS	Chr2	14750482	C-T	HOMO	INTRON
SBS	Chr2	14750483	G-A	HOMO	INTRON
SBS	Chr2	19400561	C-A	HET	INTERGENIC
SBS	Chr2	3983349	T-C	HET	INTERGENIC
SBS	Chr4	11145479	T-A	HET	INTRON
SBS	Chr5	18108885	A-G	HOMO	INTRON
SBS	Chr5	18125496	A-C	HOMO	INTERGENIC
SBS	Chr5	9684657	G-A	HET	INTERGENIC
SBS	Chr7	16963928	C-T	HET	INTERGENIC
SBS	Chr7	28706966	T-A	HOMO	INTERGENIC
SBS	Chr8	27973245	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44480
SBS	Chr8	28427156	C-A	HET	INTERGENIC
SBS	Chr8	3716198	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	15989219	G-T	HOMO	INTRON
SBS	Chr9	3969132	T-A	HOMO	INTERGENIC
SBS	Chr9	8330241	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g14070

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2851931	2851932	1
Deletion	Chr6	2853138	2853141	3
Deletion	Chr10	3544149	3544158	9
Deletion	Chr3	3930185	3930186	1
Deletion	Chr8	6420119	6420120	1	LOC_Os08g10890
Deletion	Chr8	8409544	8409545	1
Deletion	Chr1	10098199	10098202	3
Deletion	Chr2	12854366	12855402	1036
Deletion	Chr2	13408728	13484721	75993	16
Deletion	Chr1	14567120	14567126	6
Deletion	Chr11	17643001	17662000	19000	LOC_Os11g30390
Deletion	Chr9	17819352	17819357	5
Deletion	Chr7	17880641	17880659	18
Deletion	Chr2	18063988	18063995	7
Deletion	Chr10	22367937	22367945	8
Deletion	Chr1	24898726	24898731	5
Deletion	Chr6	27198821	27198827	6
Deletion	Chr7	28222400	28222407	7
Deletion	Chr5	29058489	29058541	52
Deletion	Chr3	33859075	33859076	1
Deletion	Chr1	36347592	36347593	1	LOC_Os01g62770

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14632859	14632862	4
Insertion	Chr4	14868171	14868171	1
Insertion	Chr4	32487617	32487618	2
Insertion	Chr6	13902426	13902439	14
Insertion	Chr6	9282559	9282559	1
Insertion	Chr7	24313236	24313237	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5140634	19704713	LOC_Os05g33550
Inversion	Chr8	7681507	8484377	LOC_Os08g12920
Inversion	Chr8	12951566	12984920
Inversion	Chr2	13408740	14727717
Inversion	Chr2	14727714	15206418	LOC_Os02g25910
Inversion	Chr11	17643535	18979933
Inversion	Chr12	22949880	24195206	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3129575	Chr6	18189892
Translocation	Chr5	3546434	Chr3	22228349	LOC_Os05g06790
Translocation	Chr4	4546449	Chr2	12854381	LOC_Os04g08450
Translocation	Chr11	13259842	Chr4	10208284	LOC_Os04g18470
Translocation	Chr5	19704713	Chr3	30857701	LOC_Os05g33550
Translocation	Chr5	19704895	Chr3	30859398	LOC_Os05g33550
Translocation	Chr8	27508617	Chr2	12855389
Translocation	Chr8	27508622	Chr2	12854731

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