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Mutant Information

Mutant Name	FN957-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN957-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20696672	T-C	HET	INTERGENIC
SBS	Chr1	24292437	C-T	HOMO	INTERGENIC
SBS	Chr1	35072332	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g60660
SBS	Chr1	37437871	C-T	HOMO	INTERGENIC
SBS	Chr10	12654074	G-A	HET	INTERGENIC
SBS	Chr10	13909150	A-T	HET	INTERGENIC
SBS	Chr10	6884947	T-A	HET	INTERGENIC
SBS	Chr10	6884948	T-A	HET	INTERGENIC
SBS	Chr10	6884950	G-A	HET	INTERGENIC
SBS	Chr11	11454483	T-C	HET	INTRON
SBS	Chr11	13354582	C-A	HOMO	INTRON
SBS	Chr12	1595746	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g03870
SBS	Chr12	1595747	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g03870
SBS	Chr12	21541395	G-A	HOMO	INTERGENIC
SBS	Chr2	10345265	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	20682265	A-C	HET	UTR_3_PRIME
SBS	Chr2	27609799	A-G	HET	INTERGENIC
SBS	Chr3	24786651	G-T	HET	INTERGENIC
SBS	Chr3	30157618	C-T	HOMO	INTRON
SBS	Chr3	7129959	C-T	HOMO	INTRON
SBS	Chr3	9094057	A-T	HET	INTERGENIC
SBS	Chr4	17144231	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g28920
SBS	Chr4	33349278	C-T	HET	INTERGENIC
SBS	Chr5	12804950	G-A	HET	INTERGENIC
SBS	Chr5	1965199	A-G	HOMO	INTERGENIC
SBS	Chr5	20613439	C-T	HOMO	INTERGENIC
SBS	Chr5	3982434	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07470
SBS	Chr5	4815373	G-A	HOMO	UTR_5_PRIME
SBS	Chr6	20243509	C-T	HET	INTERGENIC
SBS	Chr6	30158126	T-C	HOMO	INTERGENIC
SBS	Chr7	18165406	C-A	HOMO	INTERGENIC
SBS	Chr7	26844200	G-A	HOMO	INTERGENIC
SBS	Chr7	26963023	G-A	HOMO	INTERGENIC
SBS	Chr7	3442882	G-A	HET	INTRON
SBS	Chr7	8563563	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr8	18836910	A-T	HOMO	INTERGENIC
SBS	Chr8	27018798	C-T	HET	INTRON
SBS	Chr9	10518865	C-A	HET	INTERGENIC
SBS	Chr9	18689160	T-A	HET	INTRON
SBS	Chr9	3997712	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g07860
SBS	Chr9	7920849	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g13610

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	562001	562010	9
Deletion	Chr7	3259680	3259695	15	LOC_Os07g06680
Deletion	Chr5	3441786	3441797	11
Deletion	Chr8	5587919	5587920	1
Deletion	Chr6	5918705	5918711	6	LOC_Os06g11290
Deletion	Chr2	6229592	6229605	13	LOC_Os02g12010
Deletion	Chr8	8427612	8427615	3
Deletion	Chr4	9402670	9402673	3
Deletion	Chr8	10033778	10033781	3
Deletion	Chr12	10311384	10311397	13
Deletion	Chr11	14067621	14067631	10
Deletion	Chr10	16247064	16247065	1	LOC_Os10g31060
Deletion	Chr5	17885343	17885344	1
Deletion	Chr3	21595408	21595415	7
Deletion	Chr4	22897318	22897331	13
Deletion	Chr7	25263695	25263699	4
Deletion	Chr2	27145056	27145060	4
Deletion	Chr6	27639070	27639071	1	LOC_Os06g45650
Deletion	Chr2	32333331	32333332	1
Deletion	Chr3	35028498	35028601	103	LOC_Os03g61780

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	18552323	18552324	2
Insertion	Chr4	7471318	7471318	1
Insertion	Chr5	29627689	29627692	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	24346819	41519862
Inversion	Chr3	24396561	24958769

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	11010401	Chr4	11634136	LOC_Os06g19350
Translocation	Chr4	15896407	Chr1	9105546
Translocation	Chr4	19818386	Chr2	28876935
Translocation	Chr11	21092273	Chr8	17496660	LOC_Os08g28630
Translocation	Chr11	27827916	Chr7	17812786

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