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Mutant Information

Mutant Name	FN959-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN959-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10609653	A-T	HOMO	INTERGENIC
SBS	Chr1	13334067	G-C	HOMO	INTERGENIC
SBS	Chr1	17529841	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g32010
SBS	Chr1	30656297	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g53350
SBS	Chr1	30656298	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	40766934	T-C	HET	UTR_3_PRIME
SBS	Chr1	41526720	C-T	HET	INTERGENIC
SBS	Chr1	5486531	T-C	HOMO	INTRON
SBS	Chr1	5486599	A-T	HOMO	INTRON
SBS	Chr10	11563215	G-A	HET	INTERGENIC
SBS	Chr10	12561329	A-T	HET	INTRON
SBS	Chr10	12561330	C-T	HET	INTRON
SBS	Chr10	21360027	T-C	HET	UTR_3_PRIME
SBS	Chr11	11477660	G-A	HET	INTERGENIC
SBS	Chr11	21010216	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35790
SBS	Chr12	10271759	G-T	HOMO	INTERGENIC
SBS	Chr12	12651513	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22400
SBS	Chr12	5296102	C-A	HOMO	INTRON
SBS	Chr2	32764606	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr2	6469408	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g12400
SBS	Chr2	6469409	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g12400
SBS	Chr3	17296025	G-T	HET	INTERGENIC
SBS	Chr3	22937377	T-C	HET	INTERGENIC
SBS	Chr4	10957882	T-C	HOMO	INTERGENIC
SBS	Chr4	12702137	G-A	HOMO	INTERGENIC
SBS	Chr4	21809983	C-A	HET	INTERGENIC
SBS	Chr4	21809984	G-A	HET	INTERGENIC
SBS	Chr4	33076747	T-C	HET	INTERGENIC
SBS	Chr5	20509306	C-G	HET	INTERGENIC
SBS	Chr5	28489190	A-T	HET	INTERGENIC
SBS	Chr5	9017603	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15970
SBS	Chr6	24183411	T-A	HOMO	INTRON
SBS	Chr6	26041573	C-T	HOMO	INTERGENIC
SBS	Chr7	12544540	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	25797079	C-G	HOMO	UTR_3_PRIME
SBS	Chr7	28856528	A-T	HET	INTRON
SBS	Chr7	3353902	A-G	HET	INTERGENIC
SBS	Chr7	7898453	A-C	HOMO	INTERGENIC
SBS	Chr9	14756658	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	18945219	G-C	HET	SYNONYMOUS_CODING
SBS	Chr9	5495450	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2737703	2737716	13
Deletion	Chr7	5592044	5592056	12
Deletion	Chr10	5740834	5740841	7
Deletion	Chr4	8060808	8060815	7
Deletion	Chr7	10467936	10467937	1
Deletion	Chr3	11311144	11311153	9
Deletion	Chr6	12843378	12843385	7
Deletion	Chr6	15683188	15688412	5224	2
Deletion	Chr3	17198748	17198751	3
Deletion	Chr12	23059125	23059134	9
Deletion	Chr3	24310897	24310905	8
Deletion	Chr4	25122546	25122549	3	LOC_Os04g42451
Deletion	Chr5	25273810	25273816	6
Deletion	Chr1	26927426	26927431	5
Deletion	Chr4	28754165	28754170	5	LOC_Os04g48270
Deletion	Chr7	29382934	29383160	226	LOC_Os07g49080
Deletion	Chr2	33250184	33250201	17	LOC_Os02g54240
Deletion	Chr1	34286304	34286346	42
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960
Deletion	Chr1	40770942	40770943	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	18407650	18407651	2
Insertion	Chr11	25763332	25763335	4
Insertion	Chr2	18371365	18371366	2
Insertion	Chr3	3125221	3125221	1
Insertion	Chr6	29437910	29437910	1
Insertion	Chr7	26282583	26282586	4
Insertion	Chr7	28354245	28354246	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr8	2643721	2917770
Inversion	Chr8	2643741	2917773
Inversion	Chr2	8820028	11755698
Inversion	Chr12	10143311	10326556
Inversion	Chr3	15135436	15346173

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6127528	Chr3	25791631	2
Translocation	Chr12	8904621	Chr10	18963096
Translocation	Chr8	15269709	Chr2	12182624
Translocation	Chr3	25354096	Chr1	27882664
Translocation	Chr11	25650484	Chr7	9569163	LOC_Os11g42610

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