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Mutant Information

Mutant Name	FN961-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN961-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10799846	C-G	HET	INTERGENIC
SBS	Chr1	10805795	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g19130
SBS	Chr1	13655503	C-G	HET	INTERGENIC
SBS	Chr1	275870	T-C	HET	INTERGENIC
SBS	Chr1	29114553	C-T	HET	INTRON
SBS	Chr1	30237907	A-T	HET	INTERGENIC
SBS	Chr1	30237909	G-C	HET	INTERGENIC
SBS	Chr1	6282139	G-C	HET	INTRON
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr10	6460145	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g11690
SBS	Chr11	11314293	A-T	HOMO	INTRON
SBS	Chr12	11667645	A-G	HOMO	INTRON
SBS	Chr12	15427805	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g26400
SBS	Chr2	26304188	T-G	HET	INTERGENIC
SBS	Chr3	19996267	C-T	HET	STOP_GAINED	LOC_Os03g36050
SBS	Chr3	25860663	G-A	HET	START_GAINED	LOC_Os03g45779
SBS	Chr3	31973448	A-T	HOMO	INTERGENIC
SBS	Chr3	8880081	A-G	HET	INTERGENIC
SBS	Chr4	10066927	A-G	HET	INTERGENIC
SBS	Chr4	10300837	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	16931935	T-G	HET	SPLICE_SITE_REGION
SBS	Chr4	23624265	G-T	HET	INTERGENIC
SBS	Chr4	28706548	A-G	HOMO	INTRON
SBS	Chr4	5622410	C-T	HET	INTRON
SBS	Chr4	5979877	T-C	HET	INTERGENIC
SBS	Chr5	15929375	G-C	HOMO	INTERGENIC
SBS	Chr5	26112024	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	5104850	C-A	HET	INTERGENIC
SBS	Chr6	14033230	A-T	HET	INTERGENIC
SBS	Chr6	18096316	C-T	HET	SPLICE_SITE_DONOR	LOC_Os06g31150
SBS	Chr6	24407498	G-T	HET	INTERGENIC
SBS	Chr7	10579040	C-T	HET	INTERGENIC
SBS	Chr7	19044128	T-C	HOMO	INTERGENIC
SBS	Chr7	19156138	C-T	HOMO	INTERGENIC
SBS	Chr7	23954697	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g39930
SBS	Chr7	23995263	T-G	HOMO	INTERGENIC
SBS	Chr7	25584515	G-A	HET	INTERGENIC
SBS	Chr7	25584516	G-A	HET	INTERGENIC
SBS	Chr8	513427	G-C	HOMO	INTERGENIC
SBS	Chr8	8807498	C-T	HOMO	INTERGENIC
SBS	Chr8	9188721	G-A	HET	INTERGENIC
SBS	Chr9	11786831	T-C	HET	INTERGENIC
SBS	Chr9	12523399	G-T	HET	INTERGENIC
SBS	Chr9	7048031	G-A	HOMO	INTRON

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	935210	935212	2
Deletion	Chr3	4280653	4280663	10	LOC_Os03g08380
Deletion	Chr9	4349164	4349165	1
Deletion	Chr4	5032756	5032760	4
Deletion	Chr2	5841761	5841780	19
Deletion	Chr8	6607748	6607749	1
Deletion	Chr4	6736859	6736876	17
Deletion	Chr1	8699044	8699045	1
Deletion	Chr6	10486890	10486891	1
Deletion	Chr11	11091317	11091320	3
Deletion	Chr1	11148749	11148755	6	LOC_Os01g19660
Deletion	Chr5	14003433	14003443	10
Deletion	Chr9	15386001	15397000	11000	3
Deletion	Chr9	15481301	15481302	1
Deletion	Chr1	17859116	17859117	1
Deletion	Chr5	18706226	18706251	25
Deletion	Chr6	21097154	21097171	17
Deletion	Chr3	23168643	23168655	12	LOC_Os03g41700
Deletion	Chr3	26175512	26175534	22
Deletion	Chr1	26447338	26447339	1
Deletion	Chr11	26618591	26618592	1
Deletion	Chr7	27652662	27652663	1
Deletion	Chr1	32133882	32133905	23
Deletion	Chr4	34310159	34310161	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23445831	23445832	2
Insertion	Chr10	14914819	14914819	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	15385579	15400051
Inversion	Chr9	15396845	15400079
Inversion	Chr11	26141370	26174683	LOC_Os11g43320
Inversion	Chr11	26141394	26174690	LOC_Os11g43320

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	16666430	Chr1	11109755	LOC_Os06g29200
Translocation	Chr8	16788238	Chr3	19478448
Translocation	Chr11	27744306	Chr9	11970466	2

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