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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	103733	C-T	HET	INTERGENIC
SBS	Chr1	5956624	C-T	HET	INTERGENIC
SBS	Chr1	13162805	T-C	HET	INTERGENIC
SBS	Chr1	28131148	G-T	HET	INTERGENIC
SBS	Chr1	31329447	T-C	HET	INTERGENIC
SBS	Chr1	35333787	C-T	HET	INTERGENIC
SBS	Chr1	41938146	C-T	HET	INTERGENIC
SBS	Chr3	769673	A-C	HET	INTRON
SBS	Chr3	17850088	G-T	HET	INTERGENIC
SBS	Chr4	2537059	G-A	HOMO	INTERGENIC
SBS	Chr4	2673383	G-T	HOMO	INTERGENIC
SBS	Chr4	4369680	C-T	HOMO	INTERGENIC
SBS	Chr4	13103088	C-T	HET	INTERGENIC
SBS	Chr5	28759446	C-G	HOMO	INTERGENIC
SBS	Chr5	29890753	G-A	HET	INTRON
SBS	Chr6	8819642	G-A	HET	INTERGENIC
SBS	Chr6	11215866	C-A	HET	INTERGENIC
SBS	Chr6	26924576	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44590
SBS	Chr7	21276557	G-C	HOMO	INTERGENIC
SBS	Chr7	28423376	G-T	HOMO	INTERGENIC
SBS	Chr8	965083	G-A	HET	INTERGENIC
SBS	Chr8	4967419	T-C	HET	UTR_3_PRIME
SBS	Chr8	8494713	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14210
SBS	Chr8	25725801	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g40640
SBS	Chr9	2079819	T-C	HET	INTERGENIC
SBS	Chr9	18894591	G-C	HET	INTERGENIC
SBS	Chr10	3481253	C-A	HET	INTERGENIC
SBS	Chr10	5484231	G-A	HOMO	INTERGENIC
SBS	Chr10	16371270	G-A	HET	INTERGENIC
SBS	Chr10	18900113	G-T	HOMO	INTERGENIC
SBS	Chr11	10027772	G-A	HET	INTERGENIC
SBS	Chr11	15367130	G-A	HOMO	INTERGENIC
SBS	Chr12	11635800	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19980

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	4203993	4204002	9
Deletion	Chr2	4530850	4530852	2
Deletion	Chr8	4726802	4726809	7
Deletion	Chr3	5141936	5141937	1
Deletion	Chr4	7678052	7678074	22
Deletion	Chr4	9280449	9280452	3	LOC_Os04g16950
Deletion	Chr9	11219133	11219135	2
Deletion	Chr9	11390354	11390358	4
Deletion	Chr1	11916468	11916471	3
Deletion	Chr11	20311585	20311592	7
Deletion	Chr3	22531987	22531996	9
Deletion	Chr7	26945167	26945174	7
Deletion	Chr6	28042679	28042680	1
Deletion	Chr3	30126209	30126216	7
Deletion	Chr6	30259618	30259622	4
Deletion	Chr4	30410567	30410579	12	LOC_Os04g51350

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40409600	40409601	2	LOC_Os01g69920
Insertion	Chr6	22279922	22279923	2
Insertion	Chr1	12927263	12927263	1
Insertion	Chr3	28930902	28930902	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	13626762	13703686
Inversion	Chr8	17068520	17651544	LOC_Os08g28870

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2171944	Chr7	24487595
Translocation	Chr12	9527741	Chr6	25514508
Translocation	Chr6	10744657	Chr4	16367931
Translocation	Chr10	13900564	Chr4	16367931	LOC_Os10g26630
Translocation	Chr4	16367919	Chr2	10703139

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