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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10567248	C-T	HOMO	INTERGENIC
SBS	Chr1	22256596	T-A	HET	INTRON
SBS	Chr1	7191280	T-C	HOMO	INTERGENIC
SBS	Chr10	1691227	G-A	HET	START_GAINED	LOC_Os10g03740
SBS	Chr10	18941317	C-T	HOMO	UTR_3_PRIME
SBS	Chr11	17689817	A-C	HET	INTERGENIC
SBS	Chr11	24262431	G-A	HET	INTERGENIC
SBS	Chr12	18211695	G-C	HET	INTERGENIC
SBS	Chr12	1898014	C-T	HOMO	INTRON
SBS	Chr12	277670	G-T	HET	INTRON
SBS	Chr2	19101526	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g32350
SBS	Chr2	30652947	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g50174
SBS	Chr2	30654846	A-T	HET	INTERGENIC
SBS	Chr2	31696381	C-A	HET	INTRON
SBS	Chr2	32227242	T-G	HET	INTERGENIC
SBS	Chr2	34547853	T-C	HET	INTRON
SBS	Chr2	4108019	C-T	HOMO	INTERGENIC
SBS	Chr2	7817220	A-T	HOMO	INTERGENIC
SBS	Chr3	16340082	T-C	HOMO	INTERGENIC
SBS	Chr3	17233482	T-C	HOMO	INTERGENIC
SBS	Chr3	19287231	G-A	HOMO	INTERGENIC
SBS	Chr3	32364484	C-T	HOMO	INTERGENIC
SBS	Chr3	33349580	A-T	HET	UTR_3_PRIME
SBS	Chr3	33349581	A-T	HET	UTR_3_PRIME
SBS	Chr4	32540853	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g54710
SBS	Chr4	8979393	C-A	HET	INTERGENIC
SBS	Chr5	2022903	A-G	HOMO	INTERGENIC
SBS	Chr6	11646889	C-A	HET	INTERGENIC
SBS	Chr6	16172062	C-T	HET	INTERGENIC
SBS	Chr6	16172063	C-T	HET	INTERGENIC
SBS	Chr6	20411993	T-A	HET	INTERGENIC
SBS	Chr6	24615311	T-A	HET	INTERGENIC
SBS	Chr6	27955752	C-T	HET	INTRON
SBS	Chr6	4535826	G-C	HET	INTERGENIC
SBS	Chr7	22588144	G-A	HET	INTERGENIC
SBS	Chr7	25751570	G-A	HOMO	INTERGENIC
SBS	Chr7	3740678	C-T	HET	INTERGENIC
SBS	Chr7	5951715	C-T	HET	INTRON
SBS	Chr7	7172121	T-C	HET	INTERGENIC
SBS	Chr8	12508393	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20849
SBS	Chr9	15510050	A-G	HOMO	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1750369	1750377	8
Deletion	Chr4	2390839	2390846	7
Deletion	Chr6	4564810	4564815	5
Deletion	Chr1	5007522	5007533	11
Deletion	Chr1	5104394	5104401	7
Deletion	Chr12	5672519	5674643	2124	LOC_Os12g10630
Deletion	Chr4	10220906	10220917	11
Deletion	Chr7	10912926	10912930	4	LOC_Os07g18450
Deletion	Chr2	12298549	12298575	26
Deletion	Chr8	14907148	14907156	8
Deletion	Chr9	15585045	15585046	1
Deletion	Chr3	16207521	16207538	17
Deletion	Chr3	16411894	16411904	10
Deletion	Chr2	19091412	19091434	22	LOC_Os02g32340
Deletion	Chr11	19191736	19191739	3
Deletion	Chr9	19593456	19593457	1
Deletion	Chr5	19978072	19978083	11	LOC_Os05g33860
Deletion	Chr10	20185329	20185349	20	2
Deletion	Chr1	20907223	20907233	10
Deletion	Chr5	23498148	23498153	5
Deletion	Chr3	25195037	25195038	1
Deletion	Chr5	25511379	25511441	62
Deletion	Chr5	26146170	26146173	3	LOC_Os05g44970
Deletion	Chr12	26266653	26266660	7
Deletion	Chr2	32513468	32513487	19
Deletion	Chr2	33758045	33758048	3	LOC_Os02g55110

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2329880	2329881	2
Insertion	Chr12	26909980	26909982	3	LOC_Os12g43370
Insertion	Chr2	28012238	28012239	2
Insertion	Chr4	312993	312994	2
Insertion	Chr6	14639836	14639836	1
Insertion	Chr6	7477529	7477529	1

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7229234	33506545	LOC_Os01g57960
Inversion	Chr1	7375554	7804133
Inversion	Chr1	7375567	7804156
Inversion	Chr1	10567471	11325213
Inversion	Chr1	17167774	17535659	LOC_Os01g32030
Inversion	Chr8	20785819	21078843	LOC_Os08g33740
Inversion	Chr8	20785830	21078856	LOC_Os08g33740
Inversion	Chr3	28924665	29073843
Inversion	Chr3	28946192	29073843

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1943435	Chr6	25273419	2
Translocation	Chr5	3543877	Chr3	13563773
Translocation	Chr2	13467141	Chr1	26060845	LOC_Os01g45880
Translocation	Chr10	18628322	Chr5	9638214
Translocation	Chr12	20909879	Chr6	8520812
Translocation	Chr4	22896294	Chr2	13396941	LOC_Os04g38530
Translocation	Chr3	28946283	Chr2	21947216

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