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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14258265	T-G	HOMO	INTERGENIC
SBS	Chr1	6911808	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	765930	G-A	HET	INTERGENIC
SBS	Chr10	22354769	G-A	HET	INTERGENIC
SBS	Chr10	7596002	G-A	HET	INTERGENIC
SBS	Chr11	9972230	A-C	HET	INTERGENIC
SBS	Chr12	13810825	G-A	HET	INTERGENIC
SBS	Chr12	14608446	T-G	HET	INTRON
SBS	Chr12	16499222	T-C	HET	INTERGENIC
SBS	Chr2	10450692	C-T	HET	UTR_3_PRIME
SBS	Chr2	10450694	C-T	HET	UTR_3_PRIME
SBS	Chr2	10450697	G-T	HET	UTR_3_PRIME
SBS	Chr2	19054746	A-T	HET	INTERGENIC
SBS	Chr3	30584452	A-T	HET	INTERGENIC
SBS	Chr4	34380460	G-A	HET	INTERGENIC
SBS	Chr4	35076634	C-T	HET	INTERGENIC
SBS	Chr5	11988951	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20430
SBS	Chr5	36688	C-A	HET	UTR_3_PRIME
SBS	Chr5	36691	G-A	HET	UTR_3_PRIME
SBS	Chr5	9458275	C-T	HET	INTERGENIC
SBS	Chr6	6385425	T-A	HET	INTERGENIC
SBS	Chr7	17578531	T-G	HET	INTERGENIC
SBS	Chr7	26816304	C-A	HET	INTRON
SBS	Chr8	12493060	T-C	HET	INTERGENIC
SBS	Chr8	19048415	C-T	HET	INTERGENIC
SBS	Chr8	23745355	G-A	HET	INTRON
SBS	Chr9	4633837	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g08780
SBS	Chr9	9676857	G-T	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	96001	136000	40000	8
Deletion	Chr1	586220	586221	1	LOC_Os01g02070
Deletion	Chr7	2742151	2742152	1
Deletion	Chr6	5675580	5675582	2
Deletion	Chr1	6260993	6260994	1
Deletion	Chr3	6751020	6751033	13
Deletion	Chr10	7679476	7679480	4
Deletion	Chr8	9321663	9321676	13
Deletion	Chr2	9443849	9443850	1
Deletion	Chr2	10427378	10459424	32046	7
Deletion	Chr6	12556001	12584000	28000	5
Deletion	Chr11	12721077	12721086	9	LOC_Os11g22160
Deletion	Chr2	13118418	13118421	3
Deletion	Chr8	14380001	14392000	12000	2
Deletion	Chr2	15118199	15122715	4516	2
Deletion	Chr10	16130591	16130627	36	LOC_Os10g30910
Deletion	Chr2	16819181	16819199	18
Deletion	Chr10	18945249	18945257	8
Deletion	Chr3	19239236	19239237	1
Deletion	Chr3	20446001	20472000	26000	5
Deletion	Chr4	21913001	21929000	16000	3
Deletion	Chr2	27164257	27164258	1
Deletion	Chr3	29547847	29547848	1
Deletion	Chr2	30828689	30828717	28
Deletion	Chr3	34112019	34112032	13
Deletion	Chr4	35002583	35002595	12
Deletion	Chr1	37065656	37065660	4	LOC_Os01g63880

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	9413777	9413778	2	LOC_Os10g18560
Insertion	Chr2	19214790	19214793	4
Insertion	Chr2	19427799	19427804	6
Insertion	Chr3	26722960	26722960	1
Insertion	Chr5	13957165	13957166	2
Insertion	Chr7	29661649	29661650	2

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	1045585	Chr2	10427394	LOC_Os02g17970
Translocation	Chr5	1157148	Chr2	10458497	2
Translocation	Chr4	6133348	Chr1	41519465	LOC_Os01g71630
Translocation	Chr7	21046472	Chr3	7019544	LOC_Os07g35140
Translocation	Chr7	21047823	Chr3	7019541	LOC_Os07g35140

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