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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1241089	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	1241090	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g03170
SBS	Chr1	3907913	A-G	Homo	INTERGENIC
SBS	Chr1	4041249	A-G	Homo	INTERGENIC
SBS	Chr1	4819500	A-T	Homo	INTERGENIC
SBS	Chr1	5859975	A-G	Homo	INTERGENIC
SBS	Chr1	21079068	C-A	HET	INTRON
SBS	Chr1	22492268	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g39870
SBS	Chr1	24954639	T-C	Homo	INTERGENIC
SBS	Chr1	27328611	T-C	HET	INTERGENIC
SBS	Chr2	24252623	T-A	HET	INTERGENIC
SBS	Chr2	27949115	T-G	HET	INTERGENIC
SBS	Chr3	156134	A-G	HET	INTRON
SBS	Chr3	18992468	C-A	HET	INTERGENIC
SBS	Chr3	22843833	C-A	Homo	INTERGENIC
SBS	Chr3	23565838	G-A	HET	INTERGENIC
SBS	Chr3	33122697	C-T	Homo	INTERGENIC
SBS	Chr3	34596713	G-A	Homo	INTERGENIC
SBS	Chr4	2036058	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g04330
SBS	Chr4	2522704	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g05090
SBS	Chr4	13777200	G-A	Homo	INTERGENIC
SBS	Chr4	20839093	C-G	Homo	INTERGENIC
SBS	Chr4	26826213	A-G	HET	INTERGENIC
SBS	Chr5	12105784	A-T	Homo	INTERGENIC
SBS	Chr6	15546946	C-T	HET	INTRON
SBS	Chr6	18197714	T-C	HET	INTERGENIC
SBS	Chr6	25447842	A-C	HET	INTERGENIC
SBS	Chr6	29159055	C-T	HET	INTERGENIC
SBS	Chr7	10608673	C-T	Homo	INTERGENIC
SBS	Chr7	17292747	G-T	Homo	INTERGENIC
SBS	Chr7	17476746	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g29730
SBS	Chr7	23288564	G-T	Homo	INTERGENIC
SBS	Chr8	25652221	C-T	HET	UTR_3_PRIME
SBS	Chr9	5023505	T-A	Homo	INTRON
SBS	Chr9	8090920	A-T	Homo	INTERGENIC
SBS	Chr10	3545836	T-A	HET	INTERGENIC
SBS	Chr11	13169864	G-C	Homo	INTERGENIC
SBS	Chr11	13169867	C-A	Homo	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	726781	726782	1
Deletion	Chr4	2062215	2062228	13
Deletion	Chr4	2522393	2522394	1	LOC_Os04g05090
Deletion	Chr10	3628001	3795000	167000	25
Deletion	Chr11	5179816	517981	2
Deletion	Chr9	5748993	5748994	1	LOC_Os09g10540
Deletion	Chr3	11450001	11468000	18000	4
Deletion	Chr5	11992563	119925	28
Deletion	Chr2	14388341	14388347	6	LOC_Os02g24790
Deletion	Chr12	15173810	15173811	1
Deletion	Chr5	16209155	162091	1
Deletion	Chr9	16213969	16213981	12	LOC_Os09g26690
Deletion	Chr12	17060677	170606	1
Deletion	Chr11	18280314	182803	1
Deletion	Chr11	18328321	183283	1
Deletion	Chr8	18553397	185634	100
Deletion	Chr8	18553674	185637	100
Deletion	Chr4	19902233	19902245	12	LOC_Os04g32940
Deletion	Chr10	23059383	23059385	2
Deletion	Chr1	23919583	244282	508
Deletion	Chr6	25172664	251726	4
Deletion	Chr3	25224996	25224997	1
Deletion	Chr5	26814700	26814712	12
Deletion	Chr4	31409347	31409353	6
Deletion	Chr1	38399479	383994	2

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	36477243	36477243	1
Insertion	Chr2	335824	335824	1
Insertion	Chr4	13775792	13775792	1
Insertion	Chr9	16981174	16981174	1	LOC_Os09g27950
Insertion	Chr10	6254288	6254288	1	LOC_Os10g11270
Insertion	Chr1	27511491	27511493	3
Insertion	Chr2	35077195	35077198	4
Insertion	Chr3	15387908	15387909	2
Insertion	Chr4	15537147	15537147	1
Insertion	Chr6	21693487	21693553	67
Insertion	Chr6	24601172	24601172	1
Insertion	Chr7	6381060	6381065	6
Insertion	Chr7	9993642	9993642	1
Insertion	Chr7	12180952	12180952	1
Insertion	Chr7	25972434	25972434	1
Insertion	Chr8	18004340	18004368	29
Insertion	Chr12	6891541	6891559	19
Insertion	Chr12	21382445	21382446	2	LOC_Os12g35140

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2518584	3794899	2
Inversion	Chr1	23919590	24587408	2
Inversion	Chr1	24428233	24587409	LOC_Os01g43100

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	18181877	Chr1	30351398
Translocation	Chr9	22219245	Chr3	29724777	LOC_Os03g51830
Translocation	Chr9	22219513	Chr3	29724473	LOC_Os03g51830

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