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Mutant Information

Mutant Name	W23-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W23-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4214656	T-G	HOMO	INTERGENIC
SBS	Chr2	17707414	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g29760
SBS	Chr3	5706044	A-G	HET	INTERGENIC
SBS	Chr3	8085191	G-A	HET	INTERGENIC
SBS	Chr3	9993914	G-A	HET	INTERGENIC
SBS	Chr3	11725200	C-T	HET	UTR_5_PRIME
SBS	Chr3	19988728	T-C	HOMO	INTERGENIC
SBS	Chr3	23730811	A-G	HOMO	INTERGENIC
SBS	Chr4	2879408	G-T	HOMO	INTERGENIC
SBS	Chr4	7330762	T-A	HOMO	INTERGENIC
SBS	Chr4	10045126	G-A	HOMO	INTRON
SBS	Chr4	17587285	T-A	HET	INTRON
SBS	Chr4	18340398	T-C	HET	INTERGENIC
SBS	Chr4	31528605	C-T	HOMO	INTRON
SBS	Chr4	34415410	T-C	HET	UTR_3_PRIME
SBS	Chr6	614898	G-A	HET	INTERGENIC
SBS	Chr6	11191559	A-T	HET	INTERGENIC
SBS	Chr6	17200694	A-G	HET	INTERGENIC
SBS	Chr6	25272593	A-T	HET	INTRON
SBS	Chr7	14255132	G-A	HOMO	INTERGENIC
SBS	Chr7	15376452	T-C	HOMO	INTERGENIC
SBS	Chr8	19978891	C-A	HET	INTERGENIC
SBS	Chr9	7959031	G-A	HET	INTERGENIC
SBS	Chr9	16889573	C-T	HET	INTERGENIC
SBS	Chr10	6709697	C-T	HOMO	INTERGENIC
SBS	Chr10	6709700	C-T	HOMO	INTERGENIC
SBS	Chr10	15419707	C-T	HET	INTRON
SBS	Chr10	20002440	T-A	HET	INTRON
SBS	Chr11	15360354	C-T	HET	INTERGENIC
SBS	Chr11	21673535	T-A	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1534738	1534742	4	LOC_Os10g03550
Deletion	Chr4	3074877	3074878	1
Deletion	Chr5	3164105	3164110	5
Deletion	Chr1	5974296	5974306	10
Deletion	Chr8	8944100	8944106	6
Deletion	Chr1	10583822	10583830	8
Deletion	Chr3	10607708	10607714	6	LOC_Os03g18940
Deletion	Chr3	11269440	11269441	1	LOC_Os03g19990
Deletion	Chr1	13494847	13494848	1
Deletion	Chr8	15428678	15428683	5
Deletion	Chr7	15605161	15605172	11
Deletion	Chr11	16393064	16393065	1
Deletion	Chr1	18880661	18880666	5	LOC_Os01g34250
Deletion	Chr11	19228223	19228240	17
Deletion	Chr7	19961166	19961167	1
Deletion	Chr4	21293731	21293733	2
Deletion	Chr8	22709068	22709088	20
Deletion	Chr3	27765222	27765224	2	LOC_Os03g48710
Deletion	Chr3	35731896	35731898	2	LOC_Os03g63240
Deletion	Chr1	40658335	40658339	4

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3105924	3105926	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3046243	3545483	LOC_Os05g06100

No Translocation

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