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Mutant Information

Mutant Name	W276-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W276-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	711026	C-T	HOMO	INTRON
SBS	Chr1	5056907	G-A	HET	INTERGENIC
SBS	Chr1	8728659	A-G	HOMO	INTERGENIC
SBS	Chr1	8901173	T-A	HOMO	INTRON
SBS	Chr1	29082263	G-T	HOMO	INTERGENIC
SBS	Chr1	31377148	T-A	HOMO	INTRON
SBS	Chr2	13310651	G-A	HOMO	INTERGENIC
SBS	Chr2	22638235	A-G	HET	INTERGENIC
SBS	Chr2	32039529	G-A	HOMO	INTRON
SBS	Chr3	10512598	A-T	HET	INTERGENIC
SBS	Chr3	17954274	G-T	HOMO	INTERGENIC
SBS	Chr3	19173722	C-T	HET	INTERGENIC
SBS	Chr3	30178815	G-A	HOMO	INTERGENIC
SBS	Chr3	34561986	G-A	HOMO	INTERGENIC
SBS	Chr4	20255499	A-G	HOMO	UTR_3_PRIME
SBS	Chr5	22594754	A-G	HOMO	INTRON
SBS	Chr6	14254357	C-T	HET	INTERGENIC
SBS	Chr6	17364850	G-A	HOMO	INTERGENIC
SBS	Chr6	20119368	A-C	HOMO	INTRON
SBS	Chr6	20144913	T-G	HOMO	INTERGENIC
SBS	Chr6	24377401	G-A	HOMO	INTERGENIC
SBS	Chr7	22528133	C-T	HOMO	INTERGENIC
SBS	Chr8	16879501	T-A	HOMO	INTERGENIC
SBS	Chr8	27746761	C-T	HET	INTERGENIC
SBS	Chr10	64249	T-A	HOMO	INTERGENIC
SBS	Chr10	1767781	T-C	HOMO	INTERGENIC
SBS	Chr10	17212606	C-G	HOMO	INTERGENIC
SBS	Chr10	22384224	G-A	HOMO	INTERGENIC
SBS	Chr10	22384226	T-C	HOMO	INTERGENIC
SBS	Chr10	22928165	T-C	HOMO	INTRON
SBS	Chr10	23108305	C-T	HOMO	STOP_GAINED	LOC_Os10g42850
SBS	Chr10	23108307	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g42850
SBS	Chr11	13757452	A-T	HOMO	INTERGENIC
SBS	Chr12	12378555	G-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3907669	3907671	2
Deletion	Chr10	7176828	7176829	1
Deletion	Chr9	8945638	8945640	2	LOC_Os09g14930
Deletion	Chr7	11339066	11339067	1
Deletion	Chr10	11428750	11428984	234	LOC_Os10g22130
Deletion	Chr6	11623346	11623351	5
Deletion	Chr4	12418284	12418288	4	LOC_Os04g21930
Deletion	Chr6	13348798	13351790	2992	LOC_Os06g22870
Deletion	Chr2	13533678	13533682	4
Deletion	Chr11	13728905	13728920	15
Deletion	Chr12	14459688	14459699	11
Deletion	Chr11	15003133	15003134	1
Deletion	Chr3	17537462	17537469	7
Deletion	Chr3	19172922	19172930	8
Deletion	Chr1	19863693	19863694	1
Deletion	Chr10	23132773	23132779	6	LOC_Os10g42910
Deletion	Chr1	23315670	23315686	16
Deletion	Chr1	24321195	24321197	2
Deletion	Chr1	29204567	29204583	16
Deletion	Chr1	31159114	31159125	11
Deletion	Chr1	39374713	39374714	1
Deletion	Chr1	40500976	40500981	5

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	33401530	33401531	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	34524399	Chr1	16116457

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