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Mutant Information

Mutant Name	W278-3-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W278-3-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4110345	C-T	HOMO	INTERGENIC
SBS	Chr1	9487365	A-C	HET	INTERGENIC
SBS	Chr1	13016779	C-T	HOMO	INTERGENIC
SBS	Chr1	21711375	C-T	HET	INTERGENIC
SBS	Chr2	228053	C-A	HOMO	INTERGENIC
SBS	Chr2	7080881	T-A	HOMO	INTERGENIC
SBS	Chr2	18300758	C-T	HOMO	INTRON
SBS	Chr2	30699367	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g50280
SBS	Chr3	7314256	A-C	HET	INTERGENIC
SBS	Chr3	8932842	T-A	HET	INTERGENIC
SBS	Chr3	15597476	C-T	HET	INTERGENIC
SBS	Chr3	22331715	T-G	HOMO	INTERGENIC
SBS	Chr3	22478406	C-A	HET	INTERGENIC
SBS	Chr3	32246059	C-A	HET	INTRON
SBS	Chr4	6473396	C-T	HET	INTERGENIC
SBS	Chr4	17470864	C-T	HET	INTERGENIC
SBS	Chr4	25496025	G-A	HET	INTERGENIC
SBS	Chr4	33932862	T-C	HET	INTERGENIC
SBS	Chr5	15981727	G-A	HET	INTERGENIC
SBS	Chr5	16892071	T-C	HET	INTRON
SBS	Chr6	14615995	G-A	HOMO	INTERGENIC
SBS	Chr6	21110877	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g36080
SBS	Chr6	21845906	C-T	HET	INTERGENIC
SBS	Chr6	27024792	A-T	HET	INTERGENIC
SBS	Chr7	754380	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g02300
SBS	Chr7	15094645	A-T	HOMO	INTERGENIC
SBS	Chr8	11249991	T-A	HOMO	INTERGENIC
SBS	Chr10	8605251	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	4583494	G-A	HET	INTRON
SBS	Chr11	5914429	C-T	HET	INTRON
SBS	Chr11	11038732	C-G	HET	INTERGENIC
SBS	Chr11	11058115	T-C	HET	INTERGENIC
SBS	Chr11	18408862	A-G	HET	INTERGENIC
SBS	Chr11	20127257	T-C	HOMO	INTERGENIC
SBS	Chr12	4382603	G-A	HET	INTRON
SBS	Chr12	4724510	G-T	HET	INTERGENIC
SBS	Chr12	13972108	G-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	5287067	5287071	4
Deletion	Chr6	6232656	6232657	1
Deletion	Chr6	7149438	7149439	1
Deletion	Chr7	9210123	9210124	1	LOC_Os07g15850
Deletion	Chr5	9271319	9271323	4	LOC_Os05g16370
Deletion	Chr6	11140266	11140269	3
Deletion	Chr12	11961776	11961781	5
Deletion	Chr6	12268351	12268353	2
Deletion	Chr11	13091414	13091415	1
Deletion	Chr9	13746196	13746200	4
Deletion	Chr6	13796177	13796188	11
Deletion	Chr11	15681471	15681492	21
Deletion	Chr11	16705534	16705535	1
Deletion	Chr12	17390636	17390641	5
Deletion	Chr11	18457430	18457438	8
Deletion	Chr2	21140061	21140063	2
Deletion	Chr7	23536638	23536649	11
Deletion	Chr6	28471225	28471226	1	LOC_Os06g46920
Deletion	Chr1	28593225	28593226	1
Deletion	Chr2	31468521	31468527	6
Deletion	Chr1	34259051	34259052	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2549378	2549399	22
Insertion	Chr2	17808900	17808913	14	LOC_Os02g29960
Insertion	Chr4	27542955	27542966	12
Insertion	Chr12	6728873	6728876	4
Insertion	Chr1	4876397	4876399	3
Insertion	Chr2	16611344	16611346	3
Insertion	Chr5	27925865	27925866	2
Insertion	Chr4	7913400	7913400	1
Insertion	Chr6	1961293	1961293	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8465168	23151874

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	14577410	Chr3	12759722	LOC_Os03g22250

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