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Mutant Information

Mutant Name	W426-1-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W426-1-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20393111	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	31561398	A-T	HET	UTR_3_PRIME
SBS	Chr1	38336790	C-T	HET	INTRON
SBS	Chr2	3926952	A-G	HOMO	INTRON
SBS	Chr2	6378006	A-G	HET	INTERGENIC
SBS	Chr2	7908504	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g14400
SBS	Chr2	7908505	A-T	HOMO	STOP_GAINED	LOC_Os02g14400
SBS	Chr2	8272077	C-T	HOMO	INTERGENIC
SBS	Chr2	9500414	T-A	HOMO	UTR_3_PRIME
SBS	Chr2	33035917	G-T	HET	INTERGENIC
SBS	Chr2	33936162	T-A	HOMO	UTR_3_PRIME
SBS	Chr3	3691450	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g07220
SBS	Chr3	20935277	G-A	HET	INTERGENIC
SBS	Chr3	30569942	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g53280
SBS	Chr3	35232891	G-T	HET	INTERGENIC
SBS	Chr4	4784296	C-T	HOMO	INTERGENIC
SBS	Chr4	16126465	C-T	HOMO	INTERGENIC
SBS	Chr5	18727404	C-T	HOMO	INTERGENIC
SBS	Chr5	19880913	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g33750
SBS	Chr6	1060450	G-T	HOMO	INTRON
SBS	Chr6	14023679	G-A	HET	INTERGENIC
SBS	Chr6	14806803	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	15125109	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	27427199	A-T	HET	INTRON
SBS	Chr7	4324345	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g08420
SBS	Chr7	16324074	A-T	HET	INTERGENIC
SBS	Chr8	8834795	C-T	HET	INTRON
SBS	Chr8	22701182	G-A	HOMO	INTERGENIC
SBS	Chr8	23232465	T-C	HOMO	INTERGENIC
SBS	Chr9	22230190	A-G	HOMO	INTERGENIC
SBS	Chr10	5978672	C-T	HOMO	INTERGENIC
SBS	Chr11	6431187	G-A	HET	INTERGENIC
SBS	Chr12	6525940	G-A	HET	UTR_5_PRIME
SBS	Chr12	14257857	C-T	HET	INTERGENIC
SBS	Chr12	17015268	C-T	HET	INTERGENIC
SBS	Chr12	21647421	C-T	HET	INTERGENIC
SBS	Chr12	25232177	C-T	HOMO	INTERGENIC
SBS	Chr12	26605320	C-T	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1549995	1549998	3
Deletion	Chr7	3505001	3529000	24000	3
Deletion	Chr3	5567213	5567216	3
Deletion	Chr4	11082001	11188000	106000	20
Deletion	Chr10	11343022	11343026	4
Deletion	Chr4	13274794	13274801	7	LOC_Os04g23260
Deletion	Chr10	20488786	20488787	1	LOC_Os10g38340
Deletion	Chr6	21432235	21432236	1
Deletion	Chr6	23612442	23612443	1
Deletion	Chr4	26690988	26713695	22707	5
Deletion	Chr6	26756082	26756290	208	LOC_Os06g44320
Deletion	Chr4	27250562	27250569	7
Deletion	Chr3	28893064	28893065	1
Deletion	Chr3	30686339	30686343	4
Deletion	Chr6	31206079	31206082	3	LOC_Os06g51500

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	26713846	26713846	1
Insertion	Chr12	2611697	2611700	4
Insertion	Chr5	5951491	5951494	4
Insertion	Chr12	27012459	27012461	3
Insertion	Chr12	7813592	7813593	2
Insertion	Chr12	4435963	4435963	1
Insertion	Chr2	24964446	24964446	1
Insertion	Chr9	12928924	12928924	1

No Inversion

No Translocation

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