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Mutant Information |
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Mutant Name | W427-1-1 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download W427-1-1 Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 20
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 5474462 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 38539638 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g66350 |
SBS | Chr1 | 41155301 | C-G | HOMO | INTERGENIC | |
SBS | Chr3 | 622883 | A-G | HET | INTRON | |
SBS | Chr3 | 1587942 | A-C | HET | INTRON | |
SBS | Chr3 | 24276077 | T-G | HOMO | INTRON | |
SBS | Chr3 | 31480518 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr3 | 31790017 | T-A | HET | INTERGENIC | |
SBS | Chr4 | 493040 | T-C | HET | INTRON | |
SBS | Chr5 | 3164966 | C-T | HOMO | INTERGENIC | |
SBS | Chr5 | 5285562 | C-G | HOMO | INTERGENIC | |
SBS | Chr5 | 20606006 | A-C | HET | INTERGENIC | |
SBS | Chr8 | 4408446 | A-G | HET | INTRON | |
SBS | Chr8 | 8049933 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g13540 |
SBS | Chr8 | 9652901 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g15870 |
SBS | Chr8 | 22724850 | T-A | HET | INTERGENIC | |
SBS | Chr9 | 18030948 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 2904325 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 2618712 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g05710 |
SBS | Chr12 | 20982105 | C-T | HOMO | INTERGENIC |
Deletions: 19
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr3 | 533034 | 533041 | 7 | |
Deletion | Chr10 | 8975245 | 8975246 | 1 | |
Deletion | Chr2 | 9073779 | 9073787 | 8 | |
Deletion | Chr10 | 12282596 | 12282608 | 12 | |
Deletion | Chr3 | 12685041 | 12685042 | 1 | |
Deletion | Chr10 | 15339770 | 15339777 | 7 | |
Deletion | Chr4 | 16129989 | 16154412 | 24423 | 5 |
Deletion | Chr7 | 16270766 | 16270767 | 1 | |
Deletion | Chr11 | 16323617 | 16323618 | 1 | |
Deletion | Chr1 | 16587074 | 16587079 | 5 | |
Deletion | Chr4 | 16782837 | 16782838 | 1 | |
Deletion | Chr5 | 20994678 | 20994679 | 1 | |
Deletion | Chr6 | 24232223 | 24232233 | 10 | |
Deletion | Chr1 | 25758110 | 25758112 | 2 | LOC_Os01g45380 |
Deletion | Chr4 | 29372569 | 29372570 | 1 | |
Deletion | Chr1 | 30934944 | 30934953 | 9 | |
Deletion | Chr2 | 31540323 | 31540326 | 3 | |
Deletion | Chr3 | 33921147 | 33921149 | 2 | |
Deletion | Chr1 | 42697290 | 42697342 | 52 |
Insertions: 6
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
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Inversion | Chr5 | 25130893 | 25529839 | |
Inversion | Chr5 | 25210714 | 25529837 | LOC_Os05g43350 |
Inversion | Chr4 | 29779593 | 29833124 | LOC_Os04g49930 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr8 | 26825845 | Chr4 | 31474299 | |
Translocation | Chr8 | 26826558 | Chr4 | 31474295 |