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Mutant Information

Mutant Name	W481-5-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W481-5-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19448605	G-A	HOMO	INTERGENIC
SBS	Chr2	3315866	G-T	HET	INTRON
SBS	Chr2	3315869	G-T	HET	INTRON
SBS	Chr2	12098365	G-A	HOMO	INTERGENIC
SBS	Chr2	14044917	C-A	HET	INTRON
SBS	Chr2	31958673	G-A	HOMO	INTERGENIC
SBS	Chr3	1737551	G-A	HOMO	UTR_3_PRIME
SBS	Chr3	15636201	C-G	HET	INTERGENIC
SBS	Chr4	12193545	A-G	HOMO	INTERGENIC
SBS	Chr4	21035452	C-A	HET	INTERGENIC
SBS	Chr4	21035466	G-A	HET	INTERGENIC
SBS	Chr4	23218548	T-G	HET	INTERGENIC
SBS	Chr4	29359604	T-C	HET	INTERGENIC
SBS	Chr5	18725223	G-C	HET	INTERGENIC
SBS	Chr6	7952012	C-T	HET	INTERGENIC
SBS	Chr6	12904691	G-A	HOMO	INTRON
SBS	Chr6	20829416	C-T	HOMO	INTRON
SBS	Chr6	25806241	C-A	HOMO	INTRON
SBS	Chr7	6656326	T-G	HOMO	INTERGENIC
SBS	Chr7	11646141	C-G	HET	INTERGENIC
SBS	Chr7	26733039	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g44790
SBS	Chr8	21152580	T-C	HOMO	INTERGENIC
SBS	Chr8	26322774	C-T	HOMO	INTERGENIC
SBS	Chr9	2561263	T-G	HOMO	INTERGENIC
SBS	Chr9	13152776	C-T	HET	INTERGENIC
SBS	Chr10	18426639	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	3741390	A-G	HOMO	INTRON
SBS	Chr11	8247020	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g14630
SBS	Chr11	11568447	C-T	HOMO	INTERGENIC
SBS	Chr11	15954708	A-G	HOMO	INTERGENIC
SBS	Chr12	25772329	G-A	HET	INTRON

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	625890	625902	12	LOC_Os06g02100
Deletion	Chr4	1277911	1277920	9
Deletion	Chr1	3859587	3859591	4	LOC_Os01g07980
Deletion	Chr6	4914366	4914371	5
Deletion	Chr11	5584161	5584162	1
Deletion	Chr2	5610193	5610231	38
Deletion	Chr1	6088515	6088516	1
Deletion	Chr12	9188227	9188228	1
Deletion	Chr10	9190252	9190256	4
Deletion	Chr1	9755654	9755657	3
Deletion	Chr2	10895414	10895415	1
Deletion	Chr9	12221469	12224020	2551	LOC_Os09g20360
Deletion	Chr1	13715817	13715818	1
Deletion	Chr5	15081441	15081442	1	LOC_Os05g25930
Deletion	Chr10	17398808	17398819	11
Deletion	Chr5	18883289	18883301	12
Deletion	Chr10	18981218	18981226	8
Deletion	Chr12	22603001	22637000	34000	4
Deletion	Chr12	24291968	24291978	10
Deletion	Chr1	24964891	24964895	4
Deletion	Chr7	27162982	27162983	1	LOC_Os07g45530
Deletion	Chr8	27581360	27583611	2251	LOC_Os08g43620
Deletion	Chr2	29416124	29416141	17
Deletion	Chr2	31906259	31906295	36
Deletion	Chr1	33058474	33058475	1	LOC_Os01g57210
Deletion	Chr3	34478415	34478417	2
Deletion	Chr1	42234433	42234434	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	14898259	14898261	3
Insertion	Chr8	26105700	26105704	5
Insertion	Chr1	24524866	24524869	4
Insertion	Chr12	2713606	2713606	1	LOC_Os12g05900

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3154080	3271102	LOC_Os02g06550

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	14967401	Chr2	3154052
Translocation	Chr7	29056684	Chr1	9466784

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