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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24924128	G-A	HOMO	INTERGENIC
SBS	Chr1	25887181	C-T	HET	INTERGENIC
SBS	Chr10	17468158	T-C	HOMO	INTERGENIC
SBS	Chr10	4615341	G-C	HOMO	INTERGENIC
SBS	Chr10	7304085	G-A	HOMO	UTR_5_PRIME
SBS	Chr11	10354042	G-A	HOMO	INTRON
SBS	Chr11	17624294	T-C	HET	INTERGENIC
SBS	Chr11	1844641	A-T	HOMO	INTRON
SBS	Chr11	5506348	G-A	HOMO	INTERGENIC
SBS	Chr12	12115631	G-A	HOMO	INTERGENIC
SBS	Chr12	21373926	G-T	HET	INTERGENIC
SBS	Chr2	28833569	G-C	HOMO	UTR_5_PRIME
SBS	Chr3	15899406	C-G	HOMO	INTERGENIC
SBS	Chr3	30157618	C-T	HOMO	INTRON
SBS	Chr3	6817945	G-T	HET	INTRON
SBS	Chr3	7660437	G-T	HOMO	INTERGENIC
SBS	Chr4	10540659	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18970
SBS	Chr4	11297089	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20240
SBS	Chr4	8641092	C-T	HET	INTERGENIC
SBS	Chr5	12804950	G-A	HOMO	INTERGENIC
SBS	Chr5	13022920	C-T	HOMO	INTERGENIC
SBS	Chr5	16654079	A-T	HOMO	INTERGENIC
SBS	Chr6	23067885	C-T	HET	INTRON
SBS	Chr6	30100273	G-A	HET	INTERGENIC
SBS	Chr7	10508737	G-A	HOMO	INTRON
SBS	Chr7	10809029	G-A	HOMO	INTERGENIC
SBS	Chr7	8563563	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr9	1489681	T-A	HET	INTERGENIC
SBS	Chr9	14966645	G-T	HET	INTERGENIC
SBS	Chr9	3997712	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07860

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2232947	2232962	15
Deletion	Chr12	3212634	3212794	160	LOC_Os12g06630
Deletion	Chr9	3444135	3444146	11
Deletion	Chr10	3602018	3602035	17	LOC_Os10g06920
Deletion	Chr8	4341795	4341799	4
Deletion	Chr3	6369366	6369378	12
Deletion	Chr3	8694176	8694178	2
Deletion	Chr4	13201082	13201088	6
Deletion	Chr10	14896721	14896722	1
Deletion	Chr7	14905444	14905445	1
Deletion	Chr12	14988001	15197000	209000	26
Deletion	Chr12	15202001	15706000	504000	61
Deletion	Chr5	16631779	16631782	3
Deletion	Chr2	22298964	22298968	4
Deletion	Chr8	24492649	24492655	6	LOC_Os08g38730
Deletion	Chr11	24761001	24870000	109000	14
Deletion	Chr1	27563410	27563411	1
Deletion	Chr4	31565638	31565652	14	LOC_Os04g53000
Deletion	Chr1	34385784	34385797	13	LOC_Os01g59450
Deletion	Chr1	40345283	40345284	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	1190877	1190877	1
Insertion	Chr12	15369664	15369666	3
Insertion	Chr2	14697465	14697465	1
Insertion	Chr4	16415142	16415145	4
Insertion	Chr4	32627012	32627012	1	LOC_Os04g54850
Insertion	Chr6	22276392	22276392	1
Insertion	Chr6	23175235	23175236	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	24761113	26213049	LOC_Os11g43410
Inversion	Chr11	24869783	26213055	2

No Translocation

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