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Mutant Information

Mutant Name	W591-4-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W591-4-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14865786	G-A	HET	INTRON
SBS	Chr1	26328245	T-C	HET	INTERGENIC
SBS	Chr1	41902237	C-A	HOMO	INTERGENIC
SBS	Chr2	5329743	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g10170
SBS	Chr2	18554609	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g31050
SBS	Chr2	25410557	A-T	HET	INTERGENIC
SBS	Chr2	26627072	G-T	HET	INTRON
SBS	Chr2	29146990	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	31549660	C-A	HET	INTERGENIC
SBS	Chr2	33814991	A-G	HOMO	INTRON
SBS	Chr2	33935597	C-T	HET	INTRON
SBS	Chr3	580041	A-T	HET	INTRON
SBS	Chr3	7623578	A-G	HET	INTERGENIC
SBS	Chr3	32612771	C-A	HET	INTERGENIC
SBS	Chr4	993133	G-A	HET	INTERGENIC
SBS	Chr4	2387874	G-A	HET	INTERGENIC
SBS	Chr4	2759781	C-A	HET	INTERGENIC
SBS	Chr4	5267880	C-T	HET	INTERGENIC
SBS	Chr5	8177928	G-A	HOMO	INTRON
SBS	Chr6	16196322	A-T	HOMO	INTERGENIC
SBS	Chr6	19875163	T-C	HOMO	INTERGENIC
SBS	Chr7	13899915	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24410
SBS	Chr7	25857040	C-T	HET	INTERGENIC
SBS	Chr8	2309914	C-T	HOMO	UTR_3_PRIME
SBS	Chr8	8481884	A-G	HOMO	INTERGENIC
SBS	Chr9	5495450	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10080
SBS	Chr9	14756658	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	5100969	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g09460

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1458797	1458807	10
Deletion	Chr9	2060970	2060971	1
Deletion	Chr5	2520369	2520372	3
Deletion	Chr4	5255519	5255532	13	LOC_Os04g09800
Deletion	Chr10	5449086	5449095	9
Deletion	Chr6	7596659	7596660	1
Deletion	Chr6	8781990	8781993	3
Deletion	Chr9	10173797	10173807	10
Deletion	Chr10	13246280	13246286	6
Deletion	Chr3	16633045	16633052	7
Deletion	Chr2	19270001	19339000	69000	8
Deletion	Chr11	21884266	21884275	9
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	14222057	14222058	2
Insertion	Chr3	3098232	3098234	3
Insertion	Chr1	11675483	11675486	4
Insertion	Chr2	7348183	7348183	1
Insertion	Chr2	20917596	20917596	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	21702502	22586378	2
Inversion	Chr6	27779150	27799310	LOC_Os06g45890

No Translocation

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