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Mutant Information

Mutant Name	W598-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W598-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12697982	G-A	HOMO	INTERGENIC
SBS	Chr1	26049036	T-A	HET	INTERGENIC
SBS	Chr1	5076958	C-A	HET	INTERGENIC
SBS	Chr10	16252795	G-C	HOMO	INTERGENIC
SBS	Chr10	3014143	C-A	HOMO	INTERGENIC
SBS	Chr10	3014152	T-C	HOMO	INTERGENIC
SBS	Chr11	14348914	C-T	HET	INTERGENIC
SBS	Chr11	22406685	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g37830
SBS	Chr12	10114623	A-C	HOMO	INTERGENIC
SBS	Chr12	13641145	T-A	HOMO	INTERGENIC
SBS	Chr12	1846373	C-G	HET	INTERGENIC
SBS	Chr12	2777324	G-A	HET	INTERGENIC
SBS	Chr2	28366570	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	29922403	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g52110
SBS	Chr3	34712720	A-G	HOMO	INTERGENIC
SBS	Chr3	35873754	C-T	HOMO	INTRON
SBS	Chr3	8311425	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15190
SBS	Chr4	23381239	G-A	HOMO	INTERGENIC
SBS	Chr4	8382532	A-T	HOMO	INTERGENIC
SBS	Chr5	11210618	G-A	HET	INTERGENIC
SBS	Chr5	5154448	C-A	HET	INTRON
SBS	Chr6	12517319	G-T	HOMO	INTERGENIC
SBS	Chr6	16806983	A-T	HOMO	INTERGENIC
SBS	Chr6	30293628	C-T	HET	INTERGENIC
SBS	Chr6	7544761	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g13620
SBS	Chr7	11239727	G-A	HET	INTERGENIC
SBS	Chr7	1558613	G-A	HOMO	INTERGENIC
SBS	Chr7	16800170	G-T	HET	INTERGENIC
SBS	Chr8	10496420	A-T	HOMO	INTERGENIC
SBS	Chr8	11002016	G-A	HOMO	INTERGENIC
SBS	Chr8	24758733	C-T	HET	INTERGENIC
SBS	Chr8	26178150	T-A	HET	INTRON
SBS	Chr8	26178151	C-A	HET	INTRON
SBS	Chr8	9601011	G-A	HOMO	INTERGENIC
SBS	Chr9	8507752	G-A	HOMO	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1723689	1723705	16	LOC_Os08g03650
Deletion	Chr3	3875420	3875424	4
Deletion	Chr9	7217649	7217650	1
Deletion	Chr8	10493706	10493707	1	LOC_Os08g17140
Deletion	Chr1	12715533	12735054	19521	3
Deletion	Chr7	14546601	14546610	9
Deletion	Chr7	15335065	15335079	14
Deletion	Chr7	18875585	18875587	2	LOC_Os07g31770
Deletion	Chr8	20287592	20287594	2
Deletion	Chr4	21050663	21050672	9
Deletion	Chr5	24661617	24661624	7
Deletion	Chr6	24831109	24831120	11
Deletion	Chr6	28253663	28253664	1
Deletion	Chr1	30963793	30963806	13
Deletion	Chr1	40724156	40724180	24
Deletion	Chr1	40823638	40823652	14	LOC_Os01g70480

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	4915293	4915294	2
Insertion	Chr2	18534196	18534197	2
Insertion	Chr2	33915860	33915860	1
Insertion	Chr2	73997	73997	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	16763875	17048656	2
Inversion	Chr11	25523536	26530059	2
Inversion	Chr11	25523547	26531025	LOC_Os11g42410

No Translocation

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