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Mutant Information

Mutant Name	W607-2-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W607-2-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15170970	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr11	22468411	C-T	HET	UTR_3_PRIME
SBS	Chr12	20109548	G-T	HET	INTERGENIC
SBS	Chr12	22540210	C-T	HET	INTERGENIC
SBS	Chr12	22906042	C-G	HET	INTERGENIC
SBS	Chr12	24539957	C-T	HET	INTERGENIC
SBS	Chr2	12730099	G-C	HET	INTERGENIC
SBS	Chr2	14791915	G-A	HET	INTERGENIC
SBS	Chr2	15425851	G-A	HET	STOP_GAINED	LOC_Os02g26270
SBS	Chr2	22758608	C-T	HET	INTERGENIC
SBS	Chr2	34559129	G-A	HOMO	INTERGENIC
SBS	Chr2	742590	C-T	HET	INTERGENIC
SBS	Chr3	1572109	C-T	HET	INTERGENIC
SBS	Chr3	1812947	A-G	HET	UTR_3_PRIME
SBS	Chr3	21549705	C-T	HOMO	INTERGENIC
SBS	Chr3	8813447	G-A	HET	INTERGENIC
SBS	Chr4	13449686	G-C	HOMO	INTERGENIC
SBS	Chr4	26437076	T-G	HET	INTERGENIC
SBS	Chr4	27434851	G-A	HET	INTERGENIC
SBS	Chr4	3362794	G-A	HET	INTERGENIC
SBS	Chr5	28491639	G-A	HET	INTRON
SBS	Chr6	19578826	G-A	HET	INTERGENIC
SBS	Chr6	25598911	G-A	HOMO	INTERGENIC
SBS	Chr6	9506227	T-C	HOMO	INTERGENIC
SBS	Chr7	7218999	C-T	HET	INTERGENIC
SBS	Chr7	9015562	C-G	HET	INTERGENIC
SBS	Chr7	9015621	A-T	HET	INTERGENIC
SBS	Chr8	12564910	G-T	HOMO	INTRON
SBS	Chr8	13817288	A-T	HET	INTERGENIC
SBS	Chr8	5428143	T-G	HET	INTERGENIC

No Deletion

Insertions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23440791	23440808	18
Insertion	Chr1	25046314	25046323	10	LOC_Os01g43710
Insertion	Chr1	43063282	43063282	1
Insertion	Chr10	4315974	4315985	12
Insertion	Chr11	17669197	17669198	2
Insertion	Chr11	23208034	23208036	3
Insertion	Chr11	4832793	4832795	3
Insertion	Chr12	9316102	9316102	1	LOC_Os12g16290
Insertion	Chr2	19427799	19427804	6
Insertion	Chr2	5398468	5398468	1
Insertion	Chr3	15691743	15691761	19
Insertion	Chr3	18924045	18924048	4
Insertion	Chr3	27067432	27067433	2
Insertion	Chr3	31475003	31475010	8
Insertion	Chr4	20419641	20419648	8
Insertion	Chr4	5726357	5726386	30
Insertion	Chr4	6579205	6579214	10	LOC_Os04g11990
Insertion	Chr5	22507759	22507770	12
Insertion	Chr5	27302554	27302554	1
Insertion	Chr5	28491618	28491621	4
Insertion	Chr6	30770668	30770677	10
Insertion	Chr7	22854481	22854486	6
Insertion	Chr7	23374543	23374543	1
Insertion	Chr7	4065669	4065675	7
Insertion	Chr9	14572950	14572950	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2357527	2390391	LOC_Os09g04440
Inversion	Chr9	8953679	9368125	LOC_Os09g15330
Inversion	Chr2	18228339	18780132	LOC_Os02g30620

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1744468	Chr2	18780134	LOC_Os11g04240
Translocation	Chr11	1744832	Chr9	13489269	2
Translocation	Chr9	13488867	Chr1	40016730	2
Translocation	Chr9	13489252	Chr1	40016728	2
Translocation	Chr9	13489613	Chr2	18228257	2
Translocation	Chr8	18042969	Chr6	18884388	LOC_Os08g29430

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