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Mutant Information

Mutant Name	W7-1-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W7-1-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9355664	A-T	HET	INTRON
SBS	Chr2	760217	T-G	HET	INTERGENIC
SBS	Chr2	3959736	T-A	HET	INTERGENIC
SBS	Chr2	5396308	A-G	HET	INTRON
SBS	Chr2	6193169	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g11940
SBS	Chr2	6594952	G-A	HET	INTERGENIC
SBS	Chr2	6594953	G-A	HET	INTERGENIC
SBS	Chr2	26309562	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g43594
SBS	Chr2	29625244	G-T	HOMO	INTERGENIC
SBS	Chr2	32530870	G-A	HOMO	INTRON
SBS	Chr3	11981142	G-A	HET	INTERGENIC
SBS	Chr3	26167839	G-A	HET	INTERGENIC
SBS	Chr4	6515597	C-T	HET	INTRON
SBS	Chr4	22585233	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g37960
SBS	Chr4	22585234	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g37960
SBS	Chr5	4761240	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g08694
SBS	Chr6	21349099	A-G	HOMO	INTRON
SBS	Chr6	29674518	C-T	HET	INTERGENIC
SBS	Chr7	8172686	G-C	HOMO	INTERGENIC
SBS	Chr8	2979724	C-A	HOMO	INTRON
SBS	Chr8	2979725	G-A	HOMO	INTRON
SBS	Chr8	5428168	A-C	HOMO	INTERGENIC
SBS	Chr8	26899678	A-T	HET	INTERGENIC
SBS	Chr8	27265474	A-G	HET	INTERGENIC
SBS	Chr9	5902495	G-A	HET	INTRON
SBS	Chr9	9168555	A-G	HOMO	INTERGENIC
SBS	Chr9	15944120	C-T	HET	INTERGENIC
SBS	Chr9	19301504	A-T	HET	INTERGENIC
SBS	Chr10	2734791	A-T	HET	INTERGENIC
SBS	Chr10	7831752	G-T	HET	INTERGENIC
SBS	Chr11	15515281	A-C	HET	INTERGENIC
SBS	Chr11	19242365	A-T	HOMO	INTERGENIC
SBS	Chr11	19242366	G-T	HOMO	INTERGENIC
SBS	Chr12	16357041	A-G	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	583023	583025	2	LOC_Os10g01920
Deletion	Chr11	4307784	4307787	3
Deletion	Chr6	7006001	7006002	1	LOC_Os06g12820
Deletion	Chr2	11108629	11108631	2
Deletion	Chr9	13274113	13274119	6
Deletion	Chr3	14099493	14099494	1
Deletion	Chr11	14937244	14937246	2
Deletion	Chr3	19136134	19136145	11
Deletion	Chr2	22407456	22407462	6
Deletion	Chr1	24218376	24218379	3
Deletion	Chr11	25348436	25348437	1
Deletion	Chr7	27169485	27169506	21
Deletion	Chr8	27564539	27564546	7	LOC_Os08g43570
Deletion	Chr4	28654977	28654987	10
Deletion	Chr1	32652543	32652555	12	LOC_Os01g56600
Deletion	Chr1	34452693	34452697	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	33477026	33477031	6
Insertion	Chr5	25234605	25234608	4
Insertion	Chr7	29661649	29661650	2
Insertion	Chr8	19094576	19094576	1

No Inversion

No Translocation

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