Search Kitaake

Mutant Information

Mutant Name	FN1399-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1399-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 41661040 A-C Homo INTRON
SBS Chr2 14741282 C-T Hetero INTERGENIC
SBS Chr2 16694991 A-T Hetero INTERGENIC
SBS Chr2 31126006 G-T Hetero INTRON
SBS Chr3 300576 G-A Hetero INTERGENIC
SBS Chr3 1655314 A-T Hetero START_GAINED
SBS Chr3 1655315 G-T Hetero UTR_5_PRIME
SBS Chr3 7065572 A-T Hetero INTERGENIC
SBS Chr3 8857556 G-A Hetero INTERGENIC
SBS Chr4 7076042 C-A Hetero INTERGENIC
SBS Chr4 12498226 T-C Hetero INTERGENIC
SBS Chr4 17618914 C-T Hetero INTERGENIC
SBS Chr4 20970154 G-T Homo INTERGENIC
SBS Chr4 35951786 T-A Hetero INTERGENIC
SBS Chr5 7760802 T-C Hetero INTERGENIC
SBS Chr5 7760821 T-C Hetero INTERGENIC
SBS Chr5 18919365 G-C Hetero INTRON
SBS Chr6 1849782 A-T Hetero INTERGENIC
SBS Chr6 16233921 T-C Hetero INTERGENIC
SBS Chr6 24885013 A-T Hetero INTERGENIC
SBS Chr6 27765430 A-G Hetero INTRON
SBS Chr7 5483428 C-T Homo INTERGENIC
SBS Chr7 6772903 C-T Homo INTERGENIC
SBS Chr7 27268163 G-T Hetero INTERGENIC
SBS Chr8 14335707 A-T Hetero INTERGENIC
SBS Chr8 22659142 T-A Hetero INTRON
SBS Chr10 263854 G-A Hetero INTERGENIC
SBS Chr10 12934959 T-C Homo INTERGENIC
SBS Chr11 109544 G-A Hetero INTERGENIC
SBS Chr11 11618116 G-A Hetero INTERGENIC
SBS Chr11 12229699 T-G Hetero INTERGENIC
SBS Chr11 12237417 A-C Hetero INTERGENIC
SBS Chr12 24017733 A-T Homo INTERGENIC
SBS Chr12 26826734 C-A Homo INTERGENIC

Deletions: 118

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 412001 424000 11999 2
Deletion Chr5 577001 590000 12999 2
Deletion Chr2 595001 610000 14999 OsKitaake02g009000
Deletion Chr6 757001 781000 23999 OsKitaake06g007600
Deletion Chr8 915001 938000 22999 OsKitaake08g012200
Deletion Chr3 1085001 1104000 18999 OsKitaake03g016901
Deletion Chr9 1600001 1618000 17999 OsKitaake09g009200
Deletion Chr7 1789001 1801000 11999
Deletion Chr10 2165001 2178000 12999 2
Deletion Chr4 2451001 2469000 17999
Deletion Chr7 2644001 2656000 11999
Deletion Chr5 3399001 3419000 19999 3
Deletion Chr2 3438001 3456000 17999 OsKitaake02g050200
Deletion Chr10 3484001 3514000 29999 OsKitaake10g026400
Deletion Chr1 3646001 3665000 18999 OsKitaake01g049000
Deletion Chr9 3719001 3734000 14999
Deletion Chr7 3945001 3963000 17999 OsKitaake07g050300
Deletion Chr1 4468001 4481000 12999 OsKitaake01g059500
Deletion Chr2 4574001 4592000 17999 3
Deletion Chr7 4738001 4754000 15999
Deletion Chr2 5086001 5109000 22999 OsKitaake02g070500
Deletion Chr11 5272529 5272531 2
Deletion Chr8 5296001 5307000 10999 3
Deletion Chr8 5418001 5445000 26999 4
Deletion Chr2 5801001 5824000 22999 OsKitaake02g080100
Deletion Chr1 5850140 5850155 15
Deletion Chr8 6002673 6002675 2
Deletion Chr3 6086001 6104000 17999 2
Deletion Chr7 6217001 6232000 14999 OsKitaake07g073800
Deletion Chr11 6905896 6905897 1 OsKitaake11g079910
Deletion Chr9 6939001 6955000 15999 OsKitaake09g039700
Deletion Chr12 7144001 7158000 13999 OsKitaake12g080100
Deletion Chr6 7423874 7423875 1 OsKitaake06g096100
Deletion Chr11 7856001 7868000 11999 OsKitaake11g087100
Deletion Chr6 8236001 8254000 17999 OsKitaake06g103700
Deletion Chr2 8388001 8399000 10999 OsKitaake02g106600
Deletion Chr5 8630001 8660000 29999 OsKitaake05g082400
Deletion Chr4 8637001 8662000 24999 2
Deletion Chr9 8756001 8778000 21999 OsKitaake09g051400
Deletion Chr4 8935001 8950000 14999 OsKitaake04g046100
Deletion Chr1 9373001 9388000 14999 OsKitaake01g120200
Deletion Chr11 9466001 9488000 21999 2
Deletion Chr6 9917001 9930000 12999 OsKitaake06g115100
Deletion Chr12 10050001 10063000 12999 2
Deletion Chr12 10438001 10454000 15999 3
Deletion Chr10 11144754 11144755 1
Deletion Chr8 11432001 11490000 57999 3
Deletion Chr6 11477001 11495000 17999 OsKitaake06g126800
Deletion Chr9 12288001 12312000 23999 2
Deletion Chr6 12297001 12307000 9999 2
Deletion Chr2 12746001 12763000 16999 4
Deletion Chr2 12837001 12850000 12999 OsKitaake02g143900
Deletion Chr5 13831001 13839000 7999 2
Deletion Chr10 13863001 13886000 22999 OsKitaake10g084800
Deletion Chr9 14136001 14167000 30999 2
Deletion Chr11 14663001 14785000 121999 7
Deletion Chr9 14993001 15004000 10999
Deletion Chr10 15181001 15194000 12999 3
Deletion Chr9 15244464 15244467 3
Deletion Chr2 16069001 16094000 24999 OsKitaake02g166300
Deletion Chr2 16307001 16320000 12999 OsKitaake02g167700
Deletion Chr4 16563001 16577000 13999 OsKitaake04g080900
Deletion Chr8 16569001 16583000 13999 OsKitaake08g127300
Deletion Chr1 16663001 16685000 21999 OsKitaake01g177400
Deletion Chr3 16708001 16722000 13999 OsKitaake03g210400
Deletion Chr5 16787001 16807000 19999 OsKitaake05g128600
Deletion Chr9 16966001 16976000 9999
Deletion Chr5 17066001 17092000 25999 OsKitaake05g131400
Deletion Chr7 17071001 17083000 11999 OsKitaake07g139300
Deletion Chr1 17263001 17275000 11999
Deletion Chr4 17412001 17426000 13999 4
Deletion Chr2 17541001 17558000 16999 OsKitaake02g176100
Deletion Chr6 17567001 17582000 14999 2
Deletion Chr9 17752001 17766000 13999 OsKitaake09g134600
Deletion Chr12 17997001 18011000 13999 OsKitaake12g132300
Deletion Chr11 18036580 18036581 1
Deletion Chr11 18617001 18631000 13999 2
Deletion Chr11 18659001 18671000 11999 3
Deletion Chr2 18689001 18710000 20999 OsKitaake02g184000
Deletion Chr10 18691001 18707000 15999 3
Deletion Chr5 19095001 19108000 12999 2
Deletion Chr5 19222822 19222824 2
Deletion Chr5 19414001 19426000 11999 3
Deletion Chr10 19540056 19540066 10
Deletion Chr9 19575001 19594000 18999 2
Deletion Chr3 19995001 20012000 16999 OsKitaake03g230101
Deletion Chr3 20274001 20284000 9999
Deletion Chr12 20656001 20670000 13999 2
Deletion Chr2 20765001 20793000 27999 OsKitaake02g201300
Deletion Chr3 20876001 20890000 13999 2
Deletion Chr9 21308001 21331000 22999 2
Deletion Chr6 21327643 21327644 1
Deletion Chr4 22740001 22754000 13999 4
Deletion Chr10 23140001 23163000 22999 OsKitaake10g195250
Deletion Chr12 23444001 23461000 16999 2
Deletion Chr3 24058001 24074000 15999 OsKitaake03g257300
Deletion Chr2 24409001 24431000 21999
Deletion Chr12 24478001 24491000 12999 2
Deletion Chr1 24481688 24481689 1
Deletion Chr11 24523001 24543000 19999 OsKitaake11g197800
Deletion Chr3 25112001 25133000 20999 OsKitaake03g266200
Deletion Chr8 25755001 25771000 15999 OsKitaake08g204200
Deletion Chr1 25996001 26007000 10999 OsKitaake01g252800
Deletion Chr11 26581001 26594000 12999 2
Deletion Chr3 26634863 26634865 2
Deletion Chr7 26849001 26861000 11999 OsKitaake07g250200
Deletion Chr12 27131001 27154000 22999 OsKitaake12g228600
Deletion Chr2 27605001 27619000 13999 OsKitaake02g277500
Deletion Chr6 27918001 27933000 14999 OsKitaake06g253400
Deletion Chr3 28190001 28205000 14999 2
Deletion Chr3 28588001 28604000 15999 OsKitaake03g296500
Deletion Chr4 29082001 29100000 17999 OsKitaake04g219900
Deletion Chr3 31013001 31029000 15999 2
Deletion Chr3 31734001 31747000 12999 OsKitaake03g334600
Deletion Chr2 32164001 32188000 23999 2
Deletion Chr1 33451001 33475000 23999 OsKitaake01g342500
Deletion Chr4 35860001 35875000 14999 OsKitaake04g307300
Deletion Chr1 41462001 41485000 22999 OsKitaake01g452800

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr3 15611129 15611132 2
Insertion Chr12 11661870 11661872 1
Insertion Chr12 20083289 20083291 1 OsKitaake12g149751

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 13640015 13642602
Inversion Chr3 24895386 25796492 OsKitaake03g272000
Inversion Chr3 24895408 25796510 OsKitaake03g272000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41661040	A-C	Homo	INTRON
SBS	Chr2	14741282	C-T	Hetero	INTERGENIC
SBS	Chr2	16694991	A-T	Hetero	INTERGENIC
SBS	Chr2	31126006	G-T	Hetero	INTRON
SBS	Chr3	300576	G-A	Hetero	INTERGENIC
SBS	Chr3	1655314	A-T	Hetero	START_GAINED
SBS	Chr3	1655315	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	7065572	A-T	Hetero	INTERGENIC
SBS	Chr3	8857556	G-A	Hetero	INTERGENIC
SBS	Chr4	7076042	C-A	Hetero	INTERGENIC
SBS	Chr4	12498226	T-C	Hetero	INTERGENIC
SBS	Chr4	17618914	C-T	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Homo	INTERGENIC
SBS	Chr4	35951786	T-A	Hetero	INTERGENIC
SBS	Chr5	7760802	T-C	Hetero	INTERGENIC
SBS	Chr5	7760821	T-C	Hetero	INTERGENIC
SBS	Chr5	18919365	G-C	Hetero	INTRON
SBS	Chr6	1849782	A-T	Hetero	INTERGENIC
SBS	Chr6	16233921	T-C	Hetero	INTERGENIC
SBS	Chr6	24885013	A-T	Hetero	INTERGENIC
SBS	Chr6	27765430	A-G	Hetero	INTRON
SBS	Chr7	5483428	C-T	Homo	INTERGENIC
SBS	Chr7	6772903	C-T	Homo	INTERGENIC
SBS	Chr7	27268163	G-T	Hetero	INTERGENIC
SBS	Chr8	14335707	A-T	Hetero	INTERGENIC
SBS	Chr8	22659142	T-A	Hetero	INTRON
SBS	Chr10	263854	G-A	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Homo	INTERGENIC
SBS	Chr11	109544	G-A	Hetero	INTERGENIC
SBS	Chr11	11618116	G-A	Hetero	INTERGENIC
SBS	Chr11	12229699	T-G	Hetero	INTERGENIC
SBS	Chr11	12237417	A-C	Hetero	INTERGENIC
SBS	Chr12	24017733	A-T	Homo	INTERGENIC
SBS	Chr12	26826734	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	412001	424000	11999	2
Deletion	Chr5	577001	590000	12999	2
Deletion	Chr2	595001	610000	14999	OsKitaake02g009000
Deletion	Chr6	757001	781000	23999	OsKitaake06g007600
Deletion	Chr8	915001	938000	22999	OsKitaake08g012200
Deletion	Chr3	1085001	1104000	18999	OsKitaake03g016901
Deletion	Chr9	1600001	1618000	17999	OsKitaake09g009200
Deletion	Chr7	1789001	1801000	11999
Deletion	Chr10	2165001	2178000	12999	2
Deletion	Chr4	2451001	2469000	17999
Deletion	Chr7	2644001	2656000	11999
Deletion	Chr5	3399001	3419000	19999	3
Deletion	Chr2	3438001	3456000	17999	OsKitaake02g050200
Deletion	Chr10	3484001	3514000	29999	OsKitaake10g026400
Deletion	Chr1	3646001	3665000	18999	OsKitaake01g049000
Deletion	Chr9	3719001	3734000	14999
Deletion	Chr7	3945001	3963000	17999	OsKitaake07g050300
Deletion	Chr1	4468001	4481000	12999	OsKitaake01g059500
Deletion	Chr2	4574001	4592000	17999	3
Deletion	Chr7	4738001	4754000	15999
Deletion	Chr2	5086001	5109000	22999	OsKitaake02g070500
Deletion	Chr11	5272529	5272531	2
Deletion	Chr8	5296001	5307000	10999	3
Deletion	Chr8	5418001	5445000	26999	4
Deletion	Chr2	5801001	5824000	22999	OsKitaake02g080100
Deletion	Chr1	5850140	5850155	15
Deletion	Chr8	6002673	6002675	2
Deletion	Chr3	6086001	6104000	17999	2
Deletion	Chr7	6217001	6232000	14999	OsKitaake07g073800
Deletion	Chr11	6905896	6905897	1	OsKitaake11g079910
Deletion	Chr9	6939001	6955000	15999	OsKitaake09g039700
Deletion	Chr12	7144001	7158000	13999	OsKitaake12g080100
Deletion	Chr6	7423874	7423875	1	OsKitaake06g096100
Deletion	Chr11	7856001	7868000	11999	OsKitaake11g087100
Deletion	Chr6	8236001	8254000	17999	OsKitaake06g103700
Deletion	Chr2	8388001	8399000	10999	OsKitaake02g106600
Deletion	Chr5	8630001	8660000	29999	OsKitaake05g082400
Deletion	Chr4	8637001	8662000	24999	2
Deletion	Chr9	8756001	8778000	21999	OsKitaake09g051400
Deletion	Chr4	8935001	8950000	14999	OsKitaake04g046100
Deletion	Chr1	9373001	9388000	14999	OsKitaake01g120200
Deletion	Chr11	9466001	9488000	21999	2
Deletion	Chr6	9917001	9930000	12999	OsKitaake06g115100
Deletion	Chr12	10050001	10063000	12999	2
Deletion	Chr12	10438001	10454000	15999	3
Deletion	Chr10	11144754	11144755	1
Deletion	Chr8	11432001	11490000	57999	3
Deletion	Chr6	11477001	11495000	17999	OsKitaake06g126800
Deletion	Chr9	12288001	12312000	23999	2
Deletion	Chr6	12297001	12307000	9999	2
Deletion	Chr2	12746001	12763000	16999	4
Deletion	Chr2	12837001	12850000	12999	OsKitaake02g143900
Deletion	Chr5	13831001	13839000	7999	2
Deletion	Chr10	13863001	13886000	22999	OsKitaake10g084800
Deletion	Chr9	14136001	14167000	30999	2
Deletion	Chr11	14663001	14785000	121999	7
Deletion	Chr9	14993001	15004000	10999
Deletion	Chr10	15181001	15194000	12999	3
Deletion	Chr9	15244464	15244467	3
Deletion	Chr2	16069001	16094000	24999	OsKitaake02g166300
Deletion	Chr2	16307001	16320000	12999	OsKitaake02g167700
Deletion	Chr4	16563001	16577000	13999	OsKitaake04g080900
Deletion	Chr8	16569001	16583000	13999	OsKitaake08g127300
Deletion	Chr1	16663001	16685000	21999	OsKitaake01g177400
Deletion	Chr3	16708001	16722000	13999	OsKitaake03g210400
Deletion	Chr5	16787001	16807000	19999	OsKitaake05g128600
Deletion	Chr9	16966001	16976000	9999
Deletion	Chr5	17066001	17092000	25999	OsKitaake05g131400
Deletion	Chr7	17071001	17083000	11999	OsKitaake07g139300
Deletion	Chr1	17263001	17275000	11999
Deletion	Chr4	17412001	17426000	13999	4
Deletion	Chr2	17541001	17558000	16999	OsKitaake02g176100
Deletion	Chr6	17567001	17582000	14999	2
Deletion	Chr9	17752001	17766000	13999	OsKitaake09g134600
Deletion	Chr12	17997001	18011000	13999	OsKitaake12g132300
Deletion	Chr11	18036580	18036581	1
Deletion	Chr11	18617001	18631000	13999	2
Deletion	Chr11	18659001	18671000	11999	3
Deletion	Chr2	18689001	18710000	20999	OsKitaake02g184000
Deletion	Chr10	18691001	18707000	15999	3
Deletion	Chr5	19095001	19108000	12999	2
Deletion	Chr5	19222822	19222824	2
Deletion	Chr5	19414001	19426000	11999	3
Deletion	Chr10	19540056	19540066	10
Deletion	Chr9	19575001	19594000	18999	2
Deletion	Chr3	19995001	20012000	16999	OsKitaake03g230101
Deletion	Chr3	20274001	20284000	9999
Deletion	Chr12	20656001	20670000	13999	2
Deletion	Chr2	20765001	20793000	27999	OsKitaake02g201300
Deletion	Chr3	20876001	20890000	13999	2
Deletion	Chr9	21308001	21331000	22999	2
Deletion	Chr6	21327643	21327644	1
Deletion	Chr4	22740001	22754000	13999	4
Deletion	Chr10	23140001	23163000	22999	OsKitaake10g195250
Deletion	Chr12	23444001	23461000	16999	2
Deletion	Chr3	24058001	24074000	15999	OsKitaake03g257300
Deletion	Chr2	24409001	24431000	21999
Deletion	Chr12	24478001	24491000	12999	2
Deletion	Chr1	24481688	24481689	1
Deletion	Chr11	24523001	24543000	19999	OsKitaake11g197800
Deletion	Chr3	25112001	25133000	20999	OsKitaake03g266200
Deletion	Chr8	25755001	25771000	15999	OsKitaake08g204200
Deletion	Chr1	25996001	26007000	10999	OsKitaake01g252800
Deletion	Chr11	26581001	26594000	12999	2
Deletion	Chr3	26634863	26634865	2
Deletion	Chr7	26849001	26861000	11999	OsKitaake07g250200
Deletion	Chr12	27131001	27154000	22999	OsKitaake12g228600
Deletion	Chr2	27605001	27619000	13999	OsKitaake02g277500
Deletion	Chr6	27918001	27933000	14999	OsKitaake06g253400
Deletion	Chr3	28190001	28205000	14999	2
Deletion	Chr3	28588001	28604000	15999	OsKitaake03g296500
Deletion	Chr4	29082001	29100000	17999	OsKitaake04g219900
Deletion	Chr3	31013001	31029000	15999	2
Deletion	Chr3	31734001	31747000	12999	OsKitaake03g334600
Deletion	Chr2	32164001	32188000	23999	2
Deletion	Chr1	33451001	33475000	23999	OsKitaake01g342500
Deletion	Chr4	35860001	35875000	14999	OsKitaake04g307300
Deletion	Chr1	41462001	41485000	22999	OsKitaake01g452800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	13640015	13642602
Inversion	Chr3	24895386	25796492	OsKitaake03g272000
Inversion	Chr3	24895408	25796510	OsKitaake03g272000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes