Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1754-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1754-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18498382 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27140358 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 5594922 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 5787474 | A-C | Hetero | INTRON | |
| SBS | Chr2 | 19217291 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25667913 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 35505042 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6604422 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6755923 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 23488504 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 832591 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12542981 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 12838005 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 28503820 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8688520 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12903373 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 16357455 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18288644 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 19723591 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 20360585 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18035877 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 24442587 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 623662 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 10556814 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 21154205 | G-T | Hetero | INTRON | |
| SBS | Chr9 | 21739989 | G-C | Hetero | INTRON | |
| SBS | Chr10 | 9043891 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20581995 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 8966386 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 13115672 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15683026 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18420676 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25850478 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5550191 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20545623 | C-A | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 6525191 | 6525194 | 3 | OsKitaake02g088600 |
| Deletion | Chr4 | 10371001 | 10394000 | 22999 | 4 |
| Deletion | Chr6 | 19201001 | 19449000 | 247999 | 13 |
| Deletion | Chr5 | 19833661 | 19833667 | 6 | OsKitaake05g157600 |
| Deletion | Chr2 | 20322001 | 20535000 | 212999 | 23 |
| Deletion | Chr3 | 23954276 | 23954277 | 1 | OsKitaake03g256700 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 9330595 | 9330598 | 2 | |
| Insertion | Chr3 | 32831753 | 32831756 | 2 | |
| Insertion | Chr6 | 28944801 | 28944805 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 23318902 | 24306374 | 2 |
| Inversion | Chr3 | 23318925 | 24306393 | 2 |
| Inversion | Chr12 | 26107712 | 26973731 | |
| Inversion | Chr12 | 26107734 | 26973784 |