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Mutant Information

Mutant Name	FN2274-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2274-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 60

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9874592 C-G Hetero INTERGENIC
SBS Chr1 10456316 T-C Hetero INTERGENIC
SBS Chr1 14570801 T-C Hetero INTRON
SBS Chr1 27895094 G-A Hetero INTERGENIC
SBS Chr1 34927203 G-A Hetero INTERGENIC
SBS Chr1 35997568 G-A Hetero INTERGENIC
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr1 42652461 G-T Hetero INTERGENIC
SBS Chr1 42812252 G-A Hetero INTERGENIC
SBS Chr2 5908374 A-G Hetero INTERGENIC
SBS Chr2 11828857 A-G Hetero INTERGENIC
SBS Chr2 17055259 G-A Homo INTERGENIC
SBS Chr2 17387021 A-T Hetero INTRON
SBS Chr2 23602281 C-T Hetero INTERGENIC
SBS Chr2 28604930 G-A Hetero INTERGENIC
SBS Chr2 35792025 G-A Homo INTERGENIC
SBS Chr3 4542972 T-C Homo SPLICE_SITE_DONOR OsKitaake03g065500
SBS Chr3 8597290 T-C Hetero INTRON
SBS Chr3 9484199 G-A Homo INTERGENIC
SBS Chr3 20440261 C-T Hetero INTERGENIC
SBS Chr3 25970235 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 25970236 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g273900
SBS Chr3 32288692 C-T Hetero SPLICE_SITE_DONOR OsKitaake03g342600
SBS Chr4 1538502 C-T Homo INTERGENIC
SBS Chr4 8403692 C-T Hetero INTERGENIC
SBS Chr4 16201545 G-C Hetero INTERGENIC
SBS Chr4 16405177 T-A Hetero INTERGENIC
SBS Chr4 17430939 T-A Hetero INTERGENIC
SBS Chr5 13660 G-A Homo INTERGENIC
SBS Chr5 5925416 C-T Hetero INTERGENIC
SBS Chr5 8212810 A-T Homo INTERGENIC
SBS Chr5 21120780 A-G Hetero INTERGENIC
SBS Chr5 28543213 G-C Hetero INTERGENIC
SBS Chr6 10480463 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g118100
SBS Chr6 10480464 G-C Homo NON_SYNONYMOUS_CODING OsKitaake06g118100
SBS Chr6 11581331 G-C Homo INTERGENIC
SBS Chr6 23417101 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 6202746 C-T Hetero INTERGENIC
SBS Chr7 10323393 G-A Hetero INTERGENIC
SBS Chr7 10334312 G-T Hetero INTERGENIC
SBS Chr7 17411267 A-T Hetero INTRON
SBS Chr8 3732031 A-T Homo INTERGENIC
SBS Chr8 13378269 T-C Hetero INTRON
SBS Chr8 14997007 G-A Hetero INTERGENIC
SBS Chr8 17181496 G-T Hetero INTERGENIC
SBS Chr8 21470339 G-A Hetero INTRON
SBS Chr9 15126943 A-G Hetero INTERGENIC
SBS Chr10 5813553 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 5955357 G-A Hetero INTERGENIC
SBS Chr10 12151572 C-T Homo INTERGENIC
SBS Chr10 18166231 T-C Hetero INTERGENIC
SBS Chr10 18514443 A-G Hetero INTRON
SBS Chr10 18514590 T-G Hetero INTRON
SBS Chr10 18687006 A-G Hetero INTERGENIC
SBS Chr11 20660758 T-A Homo INTRON
SBS Chr12 75577 C-T Hetero INTRON
SBS Chr12 566936 C-T Hetero INTERGENIC
SBS Chr12 2354683 G-A Hetero INTERGENIC
SBS Chr12 7309800 C-T Hetero INTERGENIC
SBS Chr12 14338863 C-T Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1447463 1447464 1
Deletion Chr10 2228395 2228398 3
Deletion Chr5 2508456 2508466 10
Deletion Chr8 2816672 2816674 2
Deletion Chr9 3318720 3318722 2
Deletion Chr8 4067930 4067940 10
Deletion Chr1 4538435 4538439 4
Deletion Chr8 4566283 4566287 4
Deletion Chr2 6919301 6919303 2
Deletion Chr10 10154886 10154888 2
Deletion Chr3 11167253 11167257 4
Deletion Chr3 12395084 12395085 1
Deletion Chr3 14043662 14043671 9 OsKitaake03g183800
Deletion Chr10 15607779 15607781 2 OsKitaake10g101300
Deletion Chr4 16560823 16560824 1
Deletion Chr10 17473843 17473887 44
Deletion Chr9 19472131 19472134 3
Deletion Chr3 21012809 21012819 10
Deletion Chr11 24738078 24738083 5
Deletion Chr6 25065191 25065213 22
Deletion Chr11 25911464 25911466 2
Deletion Chr2 27509719 27509724 5
Deletion Chr6 29883931 29883940 9
Deletion Chr1 30390001 30399000 8999 2
Deletion Chr1 43212353 43212358 5
Deletion Chr1 43241577 43241579 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 5193334 5193337 2
Insertion Chr4 2728023 2728026 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 21746959 22077609 OsKitaake09g197900
Inversion Chr2 29498567 29793401 2
Inversion Chr2 29793402 30053495 2
Inversion Chr1 30390181 31264557 OsKitaake01g312900
Inversion Chr1 30399236 31264564 OsKitaake01g312900

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 24136453 Chr6 19420023 OsKitaake12g194100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9874592	C-G	Hetero	INTERGENIC
SBS	Chr1	10456316	T-C	Hetero	INTERGENIC
SBS	Chr1	14570801	T-C	Hetero	INTRON
SBS	Chr1	27895094	G-A	Hetero	INTERGENIC
SBS	Chr1	34927203	G-A	Hetero	INTERGENIC
SBS	Chr1	35997568	G-A	Hetero	INTERGENIC
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr1	42652461	G-T	Hetero	INTERGENIC
SBS	Chr1	42812252	G-A	Hetero	INTERGENIC
SBS	Chr2	5908374	A-G	Hetero	INTERGENIC
SBS	Chr2	11828857	A-G	Hetero	INTERGENIC
SBS	Chr2	17055259	G-A	Homo	INTERGENIC
SBS	Chr2	17387021	A-T	Hetero	INTRON
SBS	Chr2	23602281	C-T	Hetero	INTERGENIC
SBS	Chr2	28604930	G-A	Hetero	INTERGENIC
SBS	Chr2	35792025	G-A	Homo	INTERGENIC
SBS	Chr3	4542972	T-C	Homo	SPLICE_SITE_DONOR	OsKitaake03g065500
SBS	Chr3	8597290	T-C	Hetero	INTRON
SBS	Chr3	9484199	G-A	Homo	INTERGENIC
SBS	Chr3	20440261	C-T	Hetero	INTERGENIC
SBS	Chr3	25970235	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	25970236	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g273900
SBS	Chr3	32288692	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake03g342600
SBS	Chr4	1538502	C-T	Homo	INTERGENIC
SBS	Chr4	8403692	C-T	Hetero	INTERGENIC
SBS	Chr4	16201545	G-C	Hetero	INTERGENIC
SBS	Chr4	16405177	T-A	Hetero	INTERGENIC
SBS	Chr4	17430939	T-A	Hetero	INTERGENIC
SBS	Chr5	13660	G-A	Homo	INTERGENIC
SBS	Chr5	5925416	C-T	Hetero	INTERGENIC
SBS	Chr5	8212810	A-T	Homo	INTERGENIC
SBS	Chr5	21120780	A-G	Hetero	INTERGENIC
SBS	Chr5	28543213	G-C	Hetero	INTERGENIC
SBS	Chr6	10480463	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g118100
SBS	Chr6	10480464	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g118100
SBS	Chr6	11581331	G-C	Homo	INTERGENIC
SBS	Chr6	23417101	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	6202746	C-T	Hetero	INTERGENIC
SBS	Chr7	10323393	G-A	Hetero	INTERGENIC
SBS	Chr7	10334312	G-T	Hetero	INTERGENIC
SBS	Chr7	17411267	A-T	Hetero	INTRON
SBS	Chr8	3732031	A-T	Homo	INTERGENIC
SBS	Chr8	13378269	T-C	Hetero	INTRON
SBS	Chr8	14997007	G-A	Hetero	INTERGENIC
SBS	Chr8	17181496	G-T	Hetero	INTERGENIC
SBS	Chr8	21470339	G-A	Hetero	INTRON
SBS	Chr9	15126943	A-G	Hetero	INTERGENIC
SBS	Chr10	5813553	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	5955357	G-A	Hetero	INTERGENIC
SBS	Chr10	12151572	C-T	Homo	INTERGENIC
SBS	Chr10	18166231	T-C	Hetero	INTERGENIC
SBS	Chr10	18514443	A-G	Hetero	INTRON
SBS	Chr10	18514590	T-G	Hetero	INTRON
SBS	Chr10	18687006	A-G	Hetero	INTERGENIC
SBS	Chr11	20660758	T-A	Homo	INTRON
SBS	Chr12	75577	C-T	Hetero	INTRON
SBS	Chr12	566936	C-T	Hetero	INTERGENIC
SBS	Chr12	2354683	G-A	Hetero	INTERGENIC
SBS	Chr12	7309800	C-T	Hetero	INTERGENIC
SBS	Chr12	14338863	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1447463	1447464	1
Deletion	Chr10	2228395	2228398	3
Deletion	Chr5	2508456	2508466	10
Deletion	Chr8	2816672	2816674	2
Deletion	Chr9	3318720	3318722	2
Deletion	Chr8	4067930	4067940	10
Deletion	Chr1	4538435	4538439	4
Deletion	Chr8	4566283	4566287	4
Deletion	Chr2	6919301	6919303	2
Deletion	Chr10	10154886	10154888	2
Deletion	Chr3	11167253	11167257	4
Deletion	Chr3	12395084	12395085	1
Deletion	Chr3	14043662	14043671	9	OsKitaake03g183800
Deletion	Chr10	15607779	15607781	2	OsKitaake10g101300
Deletion	Chr4	16560823	16560824	1
Deletion	Chr10	17473843	17473887	44
Deletion	Chr9	19472131	19472134	3
Deletion	Chr3	21012809	21012819	10
Deletion	Chr11	24738078	24738083	5
Deletion	Chr6	25065191	25065213	22
Deletion	Chr11	25911464	25911466	2
Deletion	Chr2	27509719	27509724	5
Deletion	Chr6	29883931	29883940	9
Deletion	Chr1	30390001	30399000	8999	2
Deletion	Chr1	43212353	43212358	5
Deletion	Chr1	43241577	43241579	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21746959	22077609	OsKitaake09g197900
Inversion	Chr2	29498567	29793401	2
Inversion	Chr2	29793402	30053495	2
Inversion	Chr1	30390181	31264557	OsKitaake01g312900
Inversion	Chr1	30399236	31264564	OsKitaake01g312900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes