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Mutant Information

Mutant Name	FN2275-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2275-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2542684 T-C Hetero INTERGENIC
SBS Chr2 11061909 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g129200
SBS Chr2 15132648 T-A Hetero INTERGENIC
SBS Chr2 15133067 C-A Hetero INTERGENIC
SBS Chr2 15133068 G-A Hetero INTERGENIC
SBS Chr2 15133069 C-T Hetero INTERGENIC
SBS Chr2 28941178 T-A Homo INTERGENIC
SBS Chr2 35908491 G-A Hetero INTERGENIC
SBS Chr3 1598693 G-A Homo INTERGENIC
SBS Chr3 7502713 T-A Homo STOP_GAINED OsKitaake03g104200
SBS Chr3 12105320 A-G Hetero INTERGENIC
SBS Chr3 20179677 C-T Homo INTERGENIC
SBS Chr4 10956200 G-A Hetero INTERGENIC
SBS Chr4 16269523 T-C Hetero INTERGENIC
SBS Chr4 18198608 C-T Hetero INTERGENIC
SBS Chr4 18241034 T-A Hetero INTERGENIC
SBS Chr4 30633819 T-G Hetero INTRON
SBS Chr5 6097035 C-T Homo INTERGENIC
SBS Chr6 2326229 T-G Hetero INTERGENIC
SBS Chr6 15296629 G-A Homo INTERGENIC
SBS Chr7 1734530 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g024300
SBS Chr7 27316885 C-T Homo INTERGENIC
SBS Chr8 11304057 A-T Hetero INTERGENIC
SBS Chr8 11399856 G-A Hetero INTERGENIC
SBS Chr9 5531300 T-A Hetero UTR_3_PRIME
SBS Chr10 6462032 A-T Hetero SYNONYMOUS_CODING
SBS Chr10 6589133 G-T Hetero INTERGENIC
SBS Chr10 8886734 A-T Hetero INTERGENIC
SBS Chr10 10068473 G-A Hetero INTERGENIC
SBS Chr10 10208701 T-A Hetero INTERGENIC
SBS Chr10 17614047 C-T Hetero INTERGENIC
SBS Chr10 20583520 G-T Hetero INTERGENIC
SBS Chr11 3930500 G-A Hetero INTERGENIC
SBS Chr11 5919530 G-A Homo SYNONYMOUS_CODING
SBS Chr11 11963064 T-A Hetero INTERGENIC
SBS Chr11 14490790 G-A Hetero INTERGENIC
SBS Chr11 18057723 G-A Hetero INTERGENIC
SBS Chr12 10389001 T-C Hetero INTRON
SBS Chr12 16468469 G-C Hetero INTERGENIC
SBS Chr12 26900634 A-G Hetero INTERGENIC

Deletions: 37

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 865932 865933 1
Deletion Chr2 980314 980317 3
Deletion Chr2 2095061 2095063 2
Deletion Chr1 5061132 5061137 5
Deletion Chr10 6160282 6160283 1
Deletion Chr10 7068847 7068850 3
Deletion Chr12 7543031 7543046 15
Deletion Chr6 7974857 7974865 8
Deletion Chr12 8230774 8230779 5
Deletion Chr10 9463001 9499000 35999 6
Deletion Chr10 9572001 9676000 103999 8
Deletion Chr9 12742959 12742968 9
Deletion Chr8 12904262 12904265 3
Deletion Chr4 12966001 13055000 88999 3
Deletion Chr2 13545001 13656000 110999 4
Deletion Chr7 14065490 14065495 5
Deletion Chr11 15987312 15987313 1
Deletion Chr10 18492471 18492477 6
Deletion Chr9 18634958 18634962 4
Deletion Chr4 19439001 19448000 8999 OsKitaake04g099601
Deletion Chr11 22323001 22404000 80999 7
Deletion Chr8 22541001 22558000 16999 4
Deletion Chr8 22622233 22622238 5 OsKitaake08g173500
Deletion Chr8 24427147 24427148 1
Deletion Chr11 24862788 24862790 2
Deletion Chr6 25541486 25541492 6
Deletion Chr11 25966894 25966896 2
Deletion Chr12 26396049 26396080 31
Deletion Chr12 26801857 26801859 2
Deletion Chr8 27105524 27105526 2
Deletion Chr1 31101001 31133000 31999 5
Deletion Chr2 33488475 33488483 8
Deletion Chr3 34998988 34998991 3
Deletion Chr2 35096350 35096352 2
Deletion Chr1 39369001 39402000 32999 OsKitaake01g424700
Deletion Chr1 40060676 40060682 6
Deletion Chr1 42773920 42773923 3

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10589519 10589521 1
Insertion Chr1 11047629 11047633 3
Insertion Chr2 21380293 21380296 2
Insertion Chr2 34500236 34500240 3
Insertion Chr3 29834224 29834228 3
Insertion Chr5 19199334 19199336 1
Insertion Chr8 18758039 18758044 4
Insertion Chr10 21002581 21002584 2
Insertion Chr11 9684114 9684118 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 76094 274692
Inversion Chr10 9496596 9673336 OsKitaake10g055400
Inversion Chr4 13491907 13548471 OsKitaake04g064600

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 14132526 Chr4 13196113 OsKitaake04g062500
Translocation Chr12 14132527 Chr4 13194216 OsKitaake04g062500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2542684	T-C	Hetero	INTERGENIC
SBS	Chr2	11061909	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g129200
SBS	Chr2	15132648	T-A	Hetero	INTERGENIC
SBS	Chr2	15133067	C-A	Hetero	INTERGENIC
SBS	Chr2	15133068	G-A	Hetero	INTERGENIC
SBS	Chr2	15133069	C-T	Hetero	INTERGENIC
SBS	Chr2	28941178	T-A	Homo	INTERGENIC
SBS	Chr2	35908491	G-A	Hetero	INTERGENIC
SBS	Chr3	1598693	G-A	Homo	INTERGENIC
SBS	Chr3	7502713	T-A	Homo	STOP_GAINED	OsKitaake03g104200
SBS	Chr3	12105320	A-G	Hetero	INTERGENIC
SBS	Chr3	20179677	C-T	Homo	INTERGENIC
SBS	Chr4	10956200	G-A	Hetero	INTERGENIC
SBS	Chr4	16269523	T-C	Hetero	INTERGENIC
SBS	Chr4	18198608	C-T	Hetero	INTERGENIC
SBS	Chr4	18241034	T-A	Hetero	INTERGENIC
SBS	Chr4	30633819	T-G	Hetero	INTRON
SBS	Chr5	6097035	C-T	Homo	INTERGENIC
SBS	Chr6	2326229	T-G	Hetero	INTERGENIC
SBS	Chr6	15296629	G-A	Homo	INTERGENIC
SBS	Chr7	1734530	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g024300
SBS	Chr7	27316885	C-T	Homo	INTERGENIC
SBS	Chr8	11304057	A-T	Hetero	INTERGENIC
SBS	Chr8	11399856	G-A	Hetero	INTERGENIC
SBS	Chr9	5531300	T-A	Hetero	UTR_3_PRIME
SBS	Chr10	6462032	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	6589133	G-T	Hetero	INTERGENIC
SBS	Chr10	8886734	A-T	Hetero	INTERGENIC
SBS	Chr10	10068473	G-A	Hetero	INTERGENIC
SBS	Chr10	10208701	T-A	Hetero	INTERGENIC
SBS	Chr10	17614047	C-T	Hetero	INTERGENIC
SBS	Chr10	20583520	G-T	Hetero	INTERGENIC
SBS	Chr11	3930500	G-A	Hetero	INTERGENIC
SBS	Chr11	5919530	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	11963064	T-A	Hetero	INTERGENIC
SBS	Chr11	14490790	G-A	Hetero	INTERGENIC
SBS	Chr11	18057723	G-A	Hetero	INTERGENIC
SBS	Chr12	10389001	T-C	Hetero	INTRON
SBS	Chr12	16468469	G-C	Hetero	INTERGENIC
SBS	Chr12	26900634	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	865932	865933	1
Deletion	Chr2	980314	980317	3
Deletion	Chr2	2095061	2095063	2
Deletion	Chr1	5061132	5061137	5
Deletion	Chr10	6160282	6160283	1
Deletion	Chr10	7068847	7068850	3
Deletion	Chr12	7543031	7543046	15
Deletion	Chr6	7974857	7974865	8
Deletion	Chr12	8230774	8230779	5
Deletion	Chr10	9463001	9499000	35999	6
Deletion	Chr10	9572001	9676000	103999	8
Deletion	Chr9	12742959	12742968	9
Deletion	Chr8	12904262	12904265	3
Deletion	Chr4	12966001	13055000	88999	3
Deletion	Chr2	13545001	13656000	110999	4
Deletion	Chr7	14065490	14065495	5
Deletion	Chr11	15987312	15987313	1
Deletion	Chr10	18492471	18492477	6
Deletion	Chr9	18634958	18634962	4
Deletion	Chr4	19439001	19448000	8999	OsKitaake04g099601
Deletion	Chr11	22323001	22404000	80999	7
Deletion	Chr8	22541001	22558000	16999	4
Deletion	Chr8	22622233	22622238	5	OsKitaake08g173500
Deletion	Chr8	24427147	24427148	1
Deletion	Chr11	24862788	24862790	2
Deletion	Chr6	25541486	25541492	6
Deletion	Chr11	25966894	25966896	2
Deletion	Chr12	26396049	26396080	31
Deletion	Chr12	26801857	26801859	2
Deletion	Chr8	27105524	27105526	2
Deletion	Chr1	31101001	31133000	31999	5
Deletion	Chr2	33488475	33488483	8
Deletion	Chr3	34998988	34998991	3
Deletion	Chr2	35096350	35096352	2
Deletion	Chr1	39369001	39402000	32999	OsKitaake01g424700
Deletion	Chr1	40060676	40060682	6
Deletion	Chr1	42773920	42773923	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	76094	274692
Inversion	Chr10	9496596	9673336	OsKitaake10g055400
Inversion	Chr4	13491907	13548471	OsKitaake04g064600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes