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| Mutant Information |
|---|
| Mutant Name | W475-4-2 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W475-4-2 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8652895 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 28023375 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 33396065 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 35016413 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 16230009 | C-T | Homo | INTRON | |
| SBS | Chr2 | 24158699 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 19749478 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g229200 |
| SBS | Chr4 | 3635441 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4305010 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 6421495 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11056046 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 17161434 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 32195768 | T-C | Homo | INTRON | |
| SBS | Chr4 | 32724463 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 32724465 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35685779 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 36766586 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 17096226 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 17267392 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 27197295 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 8962630 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16159298 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 22289762 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 25761216 | G-A | Homo | INTRON | |
| SBS | Chr8 | 15009943 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1290082 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 21708918 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 275139 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 20632280 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 20544219 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 29585430 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 12025277 | C-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1485718 | 1486109 | 391 | |
| Deletion | Chr1 | 2056137 | 2056138 | 1 | |
| Deletion | Chr4 | 7797001 | 8426000 | 628999 | 32 |
| Deletion | Chr9 | 12808149 | 12808150 | 1 | |
| Deletion | Chr6 | 13096514 | 13096524 | 10 | |
| Deletion | Chr4 | 17558001 | 17558006 | 5 | |
| Deletion | Chr2 | 19564513 | 19564514 | 1 | |
| Deletion | Chr11 | 25009914 | 25009917 | 3 | |
| Deletion | Chr3 | 26084292 | 26084304 | 12 | |
| Deletion | Chr5 | 27062131 | 27062142 | 11 | OsKitaake05g242700 |
| Deletion | Chr8 | 28563097 | 28563100 | 3 | |
| Deletion | Chr8 | 28768518 | 28768519 | 1 | |
| Deletion | Chr11 | 29391846 | 29391851 | 5 | |
| Deletion | Chr4 | 35422541 | 35422545 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 27390560 | 27390564 | 3 | |
| Insertion | Chr2 | 37176660 | 37176667 | 6 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4881411 | 5705295 | |
| Inversion | Chr5 | 5056210 | 5706244 | |
| Inversion | Chr5 | 8087540 | 8764105 | |
| Inversion | Chr5 | 8087549 | 8163348 |