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Mutant Information

Mutant Name	FN-341 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-341 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24954639	T-C	HOMO	INTERGENIC
SBS	Chr1	28906728	G-A	HET	INTERGENIC
SBS	Chr1	36107872	A-T	HET	INTRON
SBS	Chr1	38328951	G-A	HET	INTERGENIC
SBS	Chr1	38328952	T-A	HET	INTERGENIC
SBS	Chr11	20150948	T-A	HET	INTERGENIC
SBS	Chr12	23434516	T-C	HOMO	INTERGENIC
SBS	Chr12	25266943	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g40820
SBS	Chr12	2683413	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g05820
SBS	Chr2	16044003	G-C	HET	INTERGENIC
SBS	Chr2	27504531	C-T	HOMO	INTERGENIC
SBS	Chr2	2791140	C-T	HOMO	INTERGENIC
SBS	Chr2	3598467	C-T	HOMO	INTERGENIC
SBS	Chr2	4665209	T-G	HET	INTRON
SBS	Chr2	5221127	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	633025	G-A	HET	INTERGENIC
SBS	Chr2	6413292	T-C	HET	INTRON
SBS	Chr3	21897213	T-C	HET	INTRON
SBS	Chr3	2766378	G-A	HET	INTERGENIC
SBS	Chr4	20383850	C-A	HET	INTRON
SBS	Chr4	2417906	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g04990
SBS	Chr4	33608480	G-T	HET	INTERGENIC
SBS	Chr4	5245748	T-C	HOMO	INTERGENIC
SBS	Chr5	12178208	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g20750
SBS	Chr6	2617627	C-T	HOMO	INTRON
SBS	Chr7	16549786	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g28350
SBS	Chr7	18219417	A-G	HET	INTERGENIC
SBS	Chr7	8099578	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g14210
SBS	Chr8	23850776	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	13645713	C-G	HET	INTERGENIC
SBS	Chr9	13645715	T-A	HET	INTERGENIC
SBS	Chr9	18029629	C-T	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1437448	1437449	1	LOC_Os12g03594
Deletion	Chr3	2579652	2579660	8
Deletion	Chr9	3368176	3368178	2
Deletion	Chr8	4191675	4191692	17	LOC_Os08g07480
Deletion	Chr2	5227927	5227939	12
Deletion	Chr10	8282605	8282608	3
Deletion	Chr7	8352199	8365423	13224	4
Deletion	Chr10	8912169	8912172	3
Deletion	Chr8	9680001	9719000	39000	7
Deletion	Chr7	11959859	11959865	6
Deletion	Chr1	13159680	13159681	1
Deletion	Chr3	14090751	14090752	1
Deletion	Chr5	14216001	14264000	48000	6
Deletion	Chr6	14741569	14741578	9	LOC_Os06g25200
Deletion	Chr6	15512549	15512554	5
Deletion	Chr5	17346736	17346737	1
Deletion	Chr10	17416033	17416043	10
Deletion	Chr12	19457651	19457653	2
Deletion	Chr8	20974149	20974175	26
Deletion	Chr5	21658594	21659287	693
Deletion	Chr2	21782364	21782365	1
Deletion	Chr8	22060515	22060519	4	LOC_Os08g35020
Deletion	Chr10	22409273	22409274	1
Deletion	Chr8	23566037	23566039	2	LOC_Os08g37280
Deletion	Chr1	24191641	24191662	21
Deletion	Chr7	27110577	27110578	1
Deletion	Chr11	27733241	27733250	9
Deletion	Chr4	28888523	29362078	473555	74
Deletion	Chr4	31424484	31424489	5	LOC_Os04g52780
Deletion	Chr4	31979990	31979991	1	LOC_Os04g53660

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	39761084	39761084	1
Insertion	Chr3	16078768	16078769	2	LOC_Os03g27990
Insertion	Chr5	20239916	20239917	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	22183543	Chr4	7084286

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