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Mutant Information

Mutant Name	FN1272-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1272-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11344916	G-A	HET	INTERGENIC
SBS	Chr1	25247238	A-T	HOMO	INTERGENIC
SBS	Chr1	26876338	C-A	HOMO	INTERGENIC
SBS	Chr1	27666127	C-T	HOMO	SPLICE_SITE_REGION
SBS	Chr1	8210443	A-T	HET	INTERGENIC
SBS	Chr10	1643330	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g03669
SBS	Chr11	1247202	G-A	HET	INTRON
SBS	Chr11	13437945	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g23760
SBS	Chr11	1481170	T-G	HET	INTERGENIC
SBS	Chr11	7444305	T-A	HOMO	INTERGENIC
SBS	Chr12	9680358	A-C	HET	INTERGENIC
SBS	Chr2	128555	C-T	HET	INTRON
SBS	Chr2	13937360	T-C	HET	INTRON
SBS	Chr3	18712750	G-A	HET	INTERGENIC
SBS	Chr3	27956670	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g49070
SBS	Chr3	28315755	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	10384185	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	27604008	G-C	HET	INTERGENIC
SBS	Chr4	33710198	C-T	HOMO	INTRON
SBS	Chr4	5312729	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g09880
SBS	Chr4	6034714	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11090
SBS	Chr5	26890059	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	10822071	G-A	HET	INTRON
SBS	Chr6	13952718	C-T	HET	INTERGENIC
SBS	Chr6	26810934	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g44410
SBS	Chr6	30436203	G-A	HOMO	INTRON
SBS	Chr6	8616303	G-C	HET	INTERGENIC
SBS	Chr7	10222575	G-T	HOMO	INTERGENIC
SBS	Chr7	13497752	C-T	HOMO	INTRON
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr7	23100994	G-A	HET	INTERGENIC
SBS	Chr7	27294551	C-T	HET	INTERGENIC
SBS	Chr7	7828659	G-A	HOMO	INTRON
SBS	Chr8	13777220	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	17997157	C-G	HET	INTERGENIC
SBS	Chr9	4383873	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08420

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1656665	1656669	4	LOC_Os08g03560
Deletion	Chr5	2184407	2184415	8
Deletion	Chr6	3020073	3020077	4
Deletion	Chr10	3473742	3473743	1	LOC_Os10g06710
Deletion	Chr9	4005437	4005442	5	LOC_Os09g07880
Deletion	Chr1	4490809	4490816	7
Deletion	Chr10	6703058	6703066	8
Deletion	Chr7	7051152	7051153	1
Deletion	Chr8	8079036	8079037	1	LOC_Os08g13590
Deletion	Chr6	8141001	8150000	9000	3
Deletion	Chr9	8819107	8819108	1
Deletion	Chr10	12636604	12636838	234	LOC_Os10g24620
Deletion	Chr5	13287153	13287156	3
Deletion	Chr10	13593503	13593515	12	LOC_Os10g26250
Deletion	Chr5	15319815	15319817	2
Deletion	Chr7	15450963	15450964	1
Deletion	Chr1	17025131	17025133	2	LOC_Os01g31124
Deletion	Chr11	22041003	22041011	8	LOC_Os11g37330
Deletion	Chr1	22968597	22968605	8
Deletion	Chr7	23009928	23009992	64
Deletion	Chr4	26111836	26111839	3	LOC_Os04g44100
Deletion	Chr3	26314526	26314529	3	LOC_Os03g46500
Deletion	Chr1	28269005	28269015	10
Deletion	Chr3	28990565	28990571	6	LOC_Os03g50780
Deletion	Chr4	30736275	30736391	116
Deletion	Chr4	32063159	32175544	112385	20
Deletion	Chr4	32223758	32248306	24548	6
Deletion	Chr4	32763001	32807000	44000	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	24994311	24994312	2	LOC_Os12g40360
Insertion	Chr3	11892663	11892663	1
Insertion	Chr4	31490833	31490835	3
Insertion	Chr9	4781773	4781774	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8003720	8140678	LOC_Os06g14350
Inversion	Chr6	8149686	8777209	LOC_Os06g15460

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1475120	Chr9	18649922	LOC_Os11g03760
Translocation	Chr11	19893548	Chr4	32806663	LOC_Os04g55180
Translocation	Chr11	19893581	Chr4	32806838	LOC_Os04g55180
Translocation	Chr11	22169094	Chr2	10151790	LOC_Os11g37540
Translocation	Chr10	22679505	Chr8	339586
Translocation	Chr7	23747951	Chr6	8784947	2
Translocation	Chr7	23747957	Chr6	8785194	2

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