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Mutant Information

Mutant Name	FN1300-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1300-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9097463	A-T	HOMO	START_GAINED	LOC_Os01g16124
SBS	Chr1	21795728	A-G	HET	INTRON
SBS	Chr1	22242179	C-A	HET	INTERGENIC
SBS	Chr1	28254768	C-G	HOMO	INTERGENIC
SBS	Chr1	28362070	A-G	HET	INTERGENIC
SBS	Chr1	36792240	A-G	HOMO	INTERGENIC
SBS	Chr2	10199560	T-A	HOMO	INTRON
SBS	Chr2	15285233	G-T	HET	INTERGENIC
SBS	Chr2	15285234	G-T	HET	INTERGENIC
SBS	Chr2	26123713	G-A	HET	INTERGENIC
SBS	Chr2	31020086	A-G	HOMO	INTERGENIC
SBS	Chr3	33150091	G-T	HOMO	INTERGENIC
SBS	Chr4	19045630	C-T	HOMO	INTRON
SBS	Chr4	32039654	G-T	HET	INTERGENIC
SBS	Chr4	34557802	G-C	HET	INTRON
SBS	Chr5	20369899	T-A	HOMO	INTERGENIC
SBS	Chr6	14404852	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	15519100	G-C	HOMO	INTERGENIC
SBS	Chr6	25778143	G-A	HET	INTERGENIC
SBS	Chr7	2395979	G-A	HOMO	INTERGENIC
SBS	Chr7	12716282	A-T	HOMO	INTERGENIC
SBS	Chr8	7063111	C-T	HET	INTRON
SBS	Chr8	14153436	G-T	HET	INTERGENIC
SBS	Chr8	14182665	C-G	HET	INTERGENIC
SBS	Chr8	17607648	T-C	HET	INTERGENIC
SBS	Chr9	364078	T-C	HOMO	INTERGENIC
SBS	Chr9	4279967	T-C	HOMO	INTERGENIC
SBS	Chr9	17269640	G-A	HET	INTERGENIC
SBS	Chr10	8906351	C-T	HET	INTERGENIC
SBS	Chr11	11919711	A-C	HET	INTRON
SBS	Chr11	14480752	G-A	HOMO	INTRON
SBS	Chr11	18008933	T-C	HET	INTERGENIC
SBS	Chr12	296212	G-T	HET	INTERGENIC
SBS	Chr12	4249794	T-G	HOMO	INTRON
SBS	Chr12	11289335	C-A	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	395411	395431	20
Deletion	Chr8	4074305	4074325	20
Deletion	Chr7	5587234	5587247	13
Deletion	Chr2	7362241	7362243	2
Deletion	Chr9	8019088	8019089	1
Deletion	Chr7	8599512	8599519	7
Deletion	Chr6	9008123	9008125	2
Deletion	Chr1	9229015	9229196	181
Deletion	Chr3	11593805	11593814	9
Deletion	Chr8	11758754	11758768	14	LOC_Os08g19650
Deletion	Chr5	11881085	11881087	2	LOC_Os05g20280
Deletion	Chr7	12290968	12290969	1
Deletion	Chr8	13441688	13441692	4
Deletion	Chr4	13642522	13642523	1	LOC_Os04g23890
Deletion	Chr11	15675759	15675760	1
Deletion	Chr7	16000086	16000087	1
Deletion	Chr5	18396997	18397003	6	LOC_Os05g31610
Deletion	Chr10	18451355	18451961	606	LOC_Os10g34614
Deletion	Chr8	18551859	18551867	8
Deletion	Chr12	19259832	19259850	18
Deletion	Chr6	21417374	21417375	1	LOC_Os06g36480
Deletion	Chr1	21795702	21795722	20
Deletion	Chr11	23911627	23911632	5
Deletion	Chr12	24040191	24040192	1
Deletion	Chr2	26002795	26002804	9
Deletion	Chr11	26946582	26946585	3	LOC_Os11g44560
Deletion	Chr6	27328960	27328963	3
Deletion	Chr7	27801052	27801097	45
Deletion	Chr6	30442121	30442122	1	LOC_Os06g50290
Deletion	Chr2	31083289	31083301	12	LOC_Os02g50850
Deletion	Chr3	33586772	33586780	8	LOC_Os03g58980
Deletion	Chr4	34695712	34695715	3	LOC_Os04g58280

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	28081723	28081724	2	LOC_Os02g46080
Insertion	Chr3	381152	381157	6
Insertion	Chr5	6316576	6316581	6
Insertion	Chr5	24126885	24126885	1
Insertion	Chr9	15125630	15125632	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	842838	1650505
Inversion	Chr2	842859	1650548

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	13372615	Chr3	24067443	LOC_Os07g23680
Translocation	Chr7	13373336	Chr3	24067421	LOC_Os07g23690
Translocation	Chr10	18451953	Chr1	40551102	2
Translocation	Chr11	28731447	Chr7	13335232

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