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Mutant Information

Mutant Name	FN1333-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1333-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24022409	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g42330
SBS	Chr1	38746306	G-T	HET	INTERGENIC
SBS	Chr1	40957566	C-T	HET	INTRON
SBS	Chr1	7410910	C-T	HOMO	INTERGENIC
SBS	Chr1	9508248	C-A	HET	INTRON
SBS	Chr10	12813098	G-A	HOMO	INTERGENIC
SBS	Chr10	12813099	T-A	HOMO	INTERGENIC
SBS	Chr10	19667015	T-C	HOMO	INTRON
SBS	Chr10	20360260	A-T	HOMO	INTERGENIC
SBS	Chr10	2735116	T-G	HOMO	INTERGENIC
SBS	Chr11	14364504	C-T	HET	INTRON
SBS	Chr11	16744826	G-A	HET	INTERGENIC
SBS	Chr11	16791344	A-G	HET	INTERGENIC
SBS	Chr11	6414617	T-C	HET	INTERGENIC
SBS	Chr11	7629472	G-C	HET	INTERGENIC
SBS	Chr12	10229918	A-T	HET	INTERGENIC
SBS	Chr2	16076936	G-A	HOMO	INTERGENIC
SBS	Chr2	29844400	C-A	HET	INTERGENIC
SBS	Chr2	34019573	G-A	HET	INTERGENIC
SBS	Chr2	34194291	G-T	HET	INTERGENIC
SBS	Chr2	34912493	T-G	HET	INTRON
SBS	Chr2	9900242	G-A	HOMO	INTERGENIC
SBS	Chr3	13559330	C-T	HET	INTERGENIC
SBS	Chr3	15857761	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	2413099	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04980
SBS	Chr3	30960063	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	35122160	G-C	HOMO	INTERGENIC
SBS	Chr3	5317502	T-A	HET	INTRON
SBS	Chr3	5317503	T-A	HET	INTRON
SBS	Chr4	29818327	G-C	HOMO	INTERGENIC
SBS	Chr4	9559332	G-A	HOMO	INTERGENIC
SBS	Chr5	11805419	C-T	HOMO	INTERGENIC
SBS	Chr5	29098538	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	5173487	C-T	HET	INTERGENIC
SBS	Chr7	19201322	T-G	HET	INTERGENIC
SBS	Chr7	2898270	T-A	HET	INTERGENIC
SBS	Chr8	1791463	G-T	HET	INTERGENIC
SBS	Chr8	21668966	T-C	HOMO	INTERGENIC
SBS	Chr8	22515427	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g35690
SBS	Chr8	355391	T-G	HET	INTERGENIC
SBS	Chr9	3974357	A-G	HOMO	INTRON

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2514634	2514642	8
Deletion	Chr3	5285290	5285297	7
Deletion	Chr9	5608623	5608631	8
Deletion	Chr4	8550365	8550366	1
Deletion	Chr7	9441334	9441335	1
Deletion	Chr10	9520794	9520801	7
Deletion	Chr12	11355251	11355256	5
Deletion	Chr6	14084216	14084226	10
Deletion	Chr11	14202280	14202284	4
Deletion	Chr3	14238627	14238630	3
Deletion	Chr6	15222135	15222137	2
Deletion	Chr7	15338644	15338645	1
Deletion	Chr10	16807616	16807618	2	LOC_Os10g31990
Deletion	Chr7	16887925	16887936	11
Deletion	Chr10	19724713	19724715	2
Deletion	Chr6	20230936	20230951	15	LOC_Os06g34810
Deletion	Chr3	22460604	22460612	8
Deletion	Chr11	22773557	22773562	5
Deletion	Chr2	23186888	23186889	1
Deletion	Chr7	27473001	27530000	57000	9
Deletion	Chr5	27540455	27540470	15
Deletion	Chr4	28784630	28784632	2
Deletion	Chr2	28847473	28847480	7	LOC_Os02g47270
Deletion	Chr11	28975001	29013000	38000	7
Deletion	Chr5	29433833	29433864	31	LOC_Os05g51310
Deletion	Chr4	29531630	29531639	9	LOC_Os04g49510
Deletion	Chr3	36396357	36396370	13	LOC_Os03g64400
Deletion	Chr1	38144001	38239000	95000	19

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	42943249	42943252	4
Insertion	Chr2	14500258	14500261	4
Insertion	Chr4	16564311	16564332	22
Insertion	Chr8	879117	879117	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	3266862	4455833	LOC_Os09g08540
Inversion	Chr3	12282148	12522799
Inversion	Chr1	38144049	38534025
Inversion	Chr1	38238729	38534031	LOC_Os01g65860

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	13445163	Chr1	23528510
Translocation	Chr11	24267216	Chr5	2247569	LOC_Os05g04740

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