Search Nipponbare

Mutant Information

Mutant Name	FN1380-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1380-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11711250	T-C	HET	INTERGENIC
SBS	Chr1	14145356	A-T	HET	INTERGENIC
SBS	Chr1	17469178	C-T	HET	INTERGENIC
SBS	Chr1	2126064	A-G	HET	INTERGENIC
SBS	Chr1	39331322	T-A	HET	INTERGENIC
SBS	Chr1	5129314	G-A	HET	INTERGENIC
SBS	Chr10	17340409	G-A	HET	INTERGENIC
SBS	Chr10	22824430	A-T	HET	INTERGENIC
SBS	Chr12	12606164	A-G	HOMO	INTRON
SBS	Chr12	22679847	G-T	HET	STOP_GAINED	LOC_Os12g37000
SBS	Chr12	26330745	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g42360
SBS	Chr2	2267527	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g04910
SBS	Chr2	6204765	A-T	HET	INTERGENIC
SBS	Chr3	11495646	T-C	HET	INTERGENIC
SBS	Chr3	25976828	C-T	HET	INTERGENIC
SBS	Chr3	35284160	G-T	HOMO	INTERGENIC
SBS	Chr3	6771684	C-A	HOMO	INTERGENIC
SBS	Chr4	1626356	T-C	HET	INTRON
SBS	Chr4	19357202	T-C	HET	INTERGENIC
SBS	Chr4	25581441	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g43230
SBS	Chr4	25581442	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g43230
SBS	Chr4	26826213	A-G	HET	INTERGENIC
SBS	Chr4	28987408	C-T	HET	INTRON
SBS	Chr5	13851288	A-G	HET	INTERGENIC
SBS	Chr5	14460023	A-G	HET	INTRON
SBS	Chr5	8308517	G-C	HET	INTERGENIC
SBS	Chr6	13587004	A-G	HET	UTR_3_PRIME
SBS	Chr6	18154209	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g31210
SBS	Chr6	1975847	C-T	HOMO	INTRON
SBS	Chr6	25072876	T-C	HET	INTERGENIC
SBS	Chr6	30179291	T-C	HET	INTERGENIC
SBS	Chr6	3689469	C-G	HOMO	INTERGENIC
SBS	Chr6	6352285	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g11920
SBS	Chr6	7017450	A-G	HET	INTERGENIC
SBS	Chr7	4890777	C-T	HET	SPLICE_SITE_REGION
SBS	Chr8	12728381	G-C	HET	INTRON
SBS	Chr8	25664162	T-A	HET	INTERGENIC
SBS	Chr8	6835186	G-A	HET	INTERGENIC
SBS	Chr8	989411	G-A	HOMO	INTERGENIC
SBS	Chr9	1033615	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g02490

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	319501	319516	15
Deletion	Chr3	392506	392520	14
Deletion	Chr10	539336	539337	1
Deletion	Chr3	1573812	1573858	46
Deletion	Chr2	3407528	3407529	1
Deletion	Chr11	4363574	4363583	9
Deletion	Chr12	5825001	6520000	695000	104
Deletion	Chr8	8160001	8295000	135000	20
Deletion	Chr5	9517968	9518046	78	LOC_Os05g16740
Deletion	Chr3	11276333	11276336	3
Deletion	Chr2	13382286	13382296	10
Deletion	Chr1	16199903	16199910	7
Deletion	Chr8	21271143	21271157	14
Deletion	Chr1	22780000	22780010	10	LOC_Os01g40340
Deletion	Chr12	23137317	23137319	2	LOC_Os12g37690
Deletion	Chr12	23789037	23789038	1
Deletion	Chr12	24480421	24480458	37	LOC_Os12g39650
Deletion	Chr12	26170428	26170443	15
Deletion	Chr12	26966859	26966868	9
Deletion	Chr7	29418479	29418480	1	LOC_Os07g49120
Deletion	Chr2	29675101	29675110	9
Deletion	Chr2	30075839	30075840	1
Deletion	Chr4	31220489	31220517	28

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	29554654	29554655	2
Insertion	Chr2	31355956	31355956	1

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	158670	Chr2	19267938

Main menu