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Mutant Information

Mutant Name	FN1382-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1382-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18459696	T-G	HET	UTR_3_PRIME
SBS	Chr1	20803992	A-C	HET	INTERGENIC
SBS	Chr1	21018735	C-T	HOMO	INTRON
SBS	Chr1	27253339	G-C	HET	INTERGENIC
SBS	Chr10	12844447	T-A	HET	INTERGENIC
SBS	Chr10	3690114	G-C	HET	INTERGENIC
SBS	Chr11	7966925	G-A	HET	INTRON
SBS	Chr11	9370680	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g16890
SBS	Chr11	9370681	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g16890
SBS	Chr12	12649558	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22400
SBS	Chr12	23171254	A-G	HET	INTRON
SBS	Chr12	24539957	C-T	HET	INTERGENIC
SBS	Chr2	14886056	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25490
SBS	Chr2	15440402	C-T	HET	INTERGENIC
SBS	Chr2	22575321	C-T	HET	INTERGENIC
SBS	Chr2	3936923	G-T	HET	INTRON
SBS	Chr3	12031403	T-C	HET	INTRON
SBS	Chr3	13018320	T-C	HET	INTERGENIC
SBS	Chr3	14707062	A-G	HET	INTERGENIC
SBS	Chr3	1812947	A-G	HET	UTR_3_PRIME
SBS	Chr3	19498150	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g34240
SBS	Chr3	21165960	A-C	HOMO	INTERGENIC
SBS	Chr3	29310073	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g51230
SBS	Chr3	35517792	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g62760
SBS	Chr3	36206647	C-T	HET	INTERGENIC
SBS	Chr3	677160	T-C	HET	INTRON
SBS	Chr4	13449686	G-C	HOMO	INTERGENIC
SBS	Chr4	7857888	C-A	HOMO	INTERGENIC
SBS	Chr5	8540221	T-G	HOMO	INTERGENIC
SBS	Chr6	21235873	C-T	HET	INTERGENIC
SBS	Chr6	25598911	G-A	HOMO	INTERGENIC
SBS	Chr6	27643516	C-T	HOMO	INTERGENIC
SBS	Chr7	10311128	G-A	HET	INTERGENIC
SBS	Chr7	1174762	G-A	HOMO	INTERGENIC
SBS	Chr7	8659926	T-C	HET	INTERGENIC
SBS	Chr8	1433231	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03130
SBS	Chr8	16754768	G-T	HET	INTERGENIC
SBS	Chr9	14198241	G-T	HET	INTERGENIC
SBS	Chr9	7907084	T-A	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	677163	677168	5
Deletion	Chr9	1067188	1067189	1
Deletion	Chr9	1307682	1307713	31
Deletion	Chr9	1577152	1577155	3	LOC_Os09g03280
Deletion	Chr12	4380447	4380449	2	LOC_Os12g08620
Deletion	Chr12	7553355	7553363	8
Deletion	Chr5	7650001	7650002	1
Deletion	Chr4	9290548	9290588	40
Deletion	Chr10	11467452	11467459	7
Deletion	Chr9	14150143	14150144	1
Deletion	Chr2	18611184	18611185	1
Deletion	Chr11	20759384	20759386	2
Deletion	Chr3	20942001	21010000	68000	7
Deletion	Chr4	22247414	22247419	5
Deletion	Chr9	22397581	22397592	11
Deletion	Chr12	22861830	22861831	1
Deletion	Chr7	24679921	24679933	12
Deletion	Chr5	25104001	25369000	265000	39
Deletion	Chr5	25378001	25519000	141000	24
Deletion	Chr11	27790758	27790759	1	LOC_Os11g45924
Deletion	Chr1	29984483	29984485	2
Deletion	Chr3	32996187	32996215	28
Deletion	Chr3	36183342	36183473	131

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10227563	10227564	2
Insertion	Chr11	4118738	4118739	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3870905	5447835	LOC_Os05g09640
Inversion	Chr11	6539682	8530347	2
Inversion	Chr5	23802910	23948863	LOC_Os05g40550
Inversion	Chr5	23803597	23948823	LOC_Os05g40560
Inversion	Chr5	25064893	25518691

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3870893	Chr1	37038515
Translocation	Chr5	5447819	Chr1	37038519	LOC_Os05g09640
Translocation	Chr6	10540144	Chr2	11628124	2
Translocation	Chr12	12895631	Chr4	29635118
Translocation	Chr6	18230346	Chr5	23802921	LOC_Os05g40550
Translocation	Chr12	22142658	Chr6	13307836

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