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Mutant Information

Mutant Name	FN1415-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1415-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (13.33% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20422547	C-T	HET	INTERGENIC
SBS	Chr10	1285812	T-C	HET	INTRON
SBS	Chr10	14481234	C-T	HET	INTERGENIC
SBS	Chr11	1045396	T-A	HET	INTERGENIC
SBS	Chr11	12280718	A-C	HET	INTERGENIC
SBS	Chr11	17623229	C-A	HET	INTERGENIC
SBS	Chr11	25217197	G-A	HET	INTERGENIC
SBS	Chr12	13712338	G-A	HET	INTERGENIC
SBS	Chr12	14356011	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25000
SBS	Chr12	17301843	G-T	HET	INTERGENIC
SBS	Chr12	3397249	T-C	HET	INTRON
SBS	Chr12	6140844	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g11370
SBS	Chr12	7524508	A-G	HET	INTRON
SBS	Chr12	7524574	G-C	HET	INTRON
SBS	Chr12	9855874	A-T	HET	INTERGENIC
SBS	Chr2	29789167	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g48640
SBS	Chr2	32158193	G-T	HET	INTERGENIC
SBS	Chr2	5300373	A-G	Homo	INTRON
SBS	Chr3	12782623	C-T	HET	INTRON
SBS	Chr3	23252003	C-G	HET	INTERGENIC
SBS	Chr3	23484289	G-A	HET	INTERGENIC
SBS	Chr4	10818616	G-A	HET	INTERGENIC
SBS	Chr4	14317018	A-C	HET	INTERGENIC
SBS	Chr4	2166301	A-T	HET	INTERGENIC
SBS	Chr5	28547688	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g49760
SBS	Chr6	14343583	G-T	HET	INTERGENIC
SBS	Chr7	10569786	T-A	HET	INTERGENIC
SBS	Chr7	14638624	T-A	HET	INTERGENIC
SBS	Chr7	8437178	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	12951652	T-C	HET	INTERGENIC
SBS	Chr9	12677596	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g21020
SBS	Chr9	13727631	C-G	HET	INTERGENIC
SBS	Chr9	13805119	C-G	Homo	INTRON

Deletions: 43

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	112525	112527	2
Deletion	Chr3	750758	750761	3
Deletion	Chr5	1001443	1001456	13
Deletion	Chr2	4235971	4235985	14
Deletion	Chr2	4621860	4621862	2	LOC_Os02g08540
Deletion	Chr12	4645321	4645323	2
Deletion	Chr6	4744950	4744955	5
Deletion	Chr11	5625835	5625850	15
Deletion	Chr4	5643847	5643848	1
Deletion	Chr1	6054750	6054754	4
Deletion	Chr1	6334252	6334277	25
Deletion	Chr10	7747917	7747918	1
Deletion	Chr6	8212872	8212876	4	LOC_Os06g14590
Deletion	Chr2	10913985	10913992	7	LOC_Os02g18700
Deletion	Chr9	11199709	11199719	10	LOC_Os09g18240
Deletion	Chr4	12161090	12161133	43
Deletion	Chr9	12432828	12432840	12
Deletion	Chr12	12683518	12683519	1	LOC_Os12g22470
Deletion	Chr9	13105802	13105803	1
Deletion	Chr6	15355251	15355254	3	LOC_Os06g26234
Deletion	Chr10	15569750	15569751	1
Deletion	Chr1	16897198	16897200	2
Deletion	Chr12	17132980	17132981	1
Deletion	Chr5	17782229	17782230	1
Deletion	Chr8	17831175	17831186	11
Deletion	Chr3	18053453	18053454	1	LOC_Os03g31630
Deletion	Chr12	19010416	19010417	1
Deletion	Chr1	19778646	19778657	11	LOC_Os01g35720
Deletion	Chr3	19832643	19832644	1
Deletion	Chr9	20897035	20897037	2
Deletion	Chr4	21274234	21274244	10
Deletion	Chr7	22026436	22026439	3	LOC_Os07g36760
Deletion	Chr1	22766710	22766711	1
Deletion	Chr6	24676741	24676742	1
Deletion	Chr2	25257568	25257575	7
Deletion	Chr1	26367126	26367128	2
Deletion	Chr12	27468730	27468732	2
Deletion	Chr2	29898158	29898160	2
Deletion	Chr4	31515142	31515143	1
Deletion	Chr3	31836811	31836815	4
Deletion	Chr2	32177302	32177306	4
Deletion	Chr3	33281250	33281251	1
Deletion	Chr1	39154827	39154828	1

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	29019542	29019617	76
Insertion	Chr1	40790248	40790249	2	LOC_Os01g70410
Insertion	Chr2	10187609	10187614	6
Insertion	Chr2	6580531	6580546	16
Insertion	Chr4	16632299	16632302	4
Insertion	Chr5	29017191	29017192	2
Insertion	Chr5	6265174	6265175	2
Insertion	Chr6	10437410	10437423	14
Insertion	Chr6	12706448	12706455	8
Insertion	Chr6	18350838	18350838	1
Insertion	Chr7	28354245	28354246	2
Insertion	Chr9	6974250	6974250	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	20102858	22331748	2
Inversion	Chr12	21403257	21549770
Inversion	Chr12	21615852	22331744	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	21044537	Chr2	32017783	LOC_Os02g52290
Translocation	Chr12	21044923	Chr2	32017735	LOC_Os02g52290

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