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Mutant Information

Mutant Name	FN1416-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1416-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13853004	T-G	HET	INTERGENIC
SBS	Chr1	25070611	T-G	HET	INTERGENIC
SBS	Chr1	2665738	C-A	HET	INTRON
SBS	Chr1	26715616	A-G	HOMO	INTERGENIC
SBS	Chr1	32161313	T-C	HOMO	INTERGENIC
SBS	Chr10	13488108	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26040
SBS	Chr10	2027730	A-C	HET	INTRON
SBS	Chr10	9868271	A-C	HET	INTERGENIC
SBS	Chr10	9880055	G-A	HET	INTRON
SBS	Chr10	9880056	C-A	HET	INTRON
SBS	Chr11	15180057	G-A	HOMO	INTERGENIC
SBS	Chr11	28161209	G-A	HET	INTRON
SBS	Chr12	9199365	C-A	HET	INTRON
SBS	Chr12	942621	C-T	HET	INTRON
SBS	Chr2	1056214	C-T	HET	INTRON
SBS	Chr2	26468591	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	27148179	C-T	HET	INTERGENIC
SBS	Chr3	13808699	T-A	HET	INTERGENIC
SBS	Chr3	15681757	G-A	HET	INTERGENIC
SBS	Chr3	1628850	C-T	HOMO	INTRON
SBS	Chr4	10472705	T-C	HET	INTERGENIC
SBS	Chr4	1280346	G-T	HET	INTRON
SBS	Chr4	16958490	A-C	HET	INTERGENIC
SBS	Chr4	1722598	C-T	HET	INTERGENIC
SBS	Chr4	2246198	C-A	HET	INTERGENIC
SBS	Chr4	24915303	A-T	HET	UTR_5_PRIME
SBS	Chr4	5707877	A-G	HET	INTERGENIC
SBS	Chr5	24229829	A-C	HET	INTERGENIC
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr6	29663981	T-C	HET	INTRON
SBS	Chr7	12371990	C-A	HET	INTERGENIC
SBS	Chr7	171031	T-A	HET	INTRON
SBS	Chr7	18149688	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30670
SBS	Chr8	7038836	C-A	HOMO	INTERGENIC
SBS	Chr8	7272565	C-T	HET	INTERGENIC
SBS	Chr9	2452355	C-T	HOMO	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1041815	1041834	19
Deletion	Chr10	1265078	1265080	2
Deletion	Chr3	1413136	1413137	1
Deletion	Chr3	9592824	9592841	17
Deletion	Chr8	11749788	11749790	2
Deletion	Chr10	12496199	12499837	3638	LOC_Os10g24390
Deletion	Chr1	13423081	13423082	1	LOC_Os01g23850
Deletion	Chr3	13432396	13432399	3
Deletion	Chr3	13839887	13839947	60
Deletion	Chr7	15419553	15419680	127
Deletion	Chr9	16109809	16109817	8
Deletion	Chr6	19850157	19850163	6
Deletion	Chr11	21844231	21844242	11
Deletion	Chr8	22522001	22728000	206000	36
Deletion	Chr8	22739001	22972000	233000	29
Deletion	Chr5	22990619	22990630	11
Deletion	Chr11	23275716	23275738	22
Deletion	Chr1	23283123	23283124	1
Deletion	Chr1	23714329	23714332	3
Deletion	Chr7	24144354	24144355	1
Deletion	Chr1	27430963	27430964	1
Deletion	Chr5	27492644	27492646	2
Deletion	Chr3	28685436	28685439	3
Deletion	Chr3	30494949	30494959	10
Deletion	Chr3	31991310	31991317	7	LOC_Os03g56140
Deletion	Chr4	32616754	32616764	10	LOC_Os04g54840
Deletion	Chr3	36197599	36197600	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	22478352	22478352	1
Insertion	Chr12	6728873	6728876	4
Insertion	Chr2	5449446	5449448	3
Insertion	Chr4	3952441	3952445	5
Insertion	Chr5	822514	822516	3	LOC_Os05g02435
Insertion	Chr6	4421592	4421593	2
Insertion	Chr6	9927539	9927539	1
Insertion	Chr9	20133590	20133594	5

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	8921347	9502564	2
Inversion	Chr4	19170232	19590961	LOC_Os04g32010

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8921391	Chr5	8891431	2
Translocation	Chr10	8921475	Chr7	15419693	LOC_Os10g17650

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