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Mutant Information

Mutant Name	FN1424-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1424-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17823737	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g32500
SBS	Chr1	20080103	T-C	HOMO	INTERGENIC
SBS	Chr1	2382665	A-G	HOMO	UTR_5_PRIME
SBS	Chr1	25479624	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g44430
SBS	Chr1	39038186	C-T	HET	INTERGENIC
SBS	Chr10	12973451	C-T	HET	INTRON
SBS	Chr10	5304480	C-T	HET	INTRON
SBS	Chr10	6776389	T-A	HET	INTERGENIC
SBS	Chr10	8668883	A-C	HET	INTERGENIC
SBS	Chr11	17902605	C-T	HET	INTERGENIC
SBS	Chr11	18731003	G-A	HOMO	INTRON
SBS	Chr11	23817490	C-T	HOMO	INTERGENIC
SBS	Chr11	24285165	A-T	HET	INTERGENIC
SBS	Chr11	27699841	T-C	HOMO	INTERGENIC
SBS	Chr2	10831972	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18570
SBS	Chr2	11723886	G-A	HOMO	INTRON
SBS	Chr2	13443025	G-A	HET	INTERGENIC
SBS	Chr2	28224967	C-G	HET	UTR_5_PRIME
SBS	Chr3	21858087	C-A	HET	INTERGENIC
SBS	Chr3	27780451	C-T	HET	INTERGENIC
SBS	Chr3	6493244	A-G	HOMO	INTERGENIC
SBS	Chr3	7798010	T-C	HET	INTRON
SBS	Chr4	15526245	G-A	HOMO	INTERGENIC
SBS	Chr4	17317021	C-T	HET	INTERGENIC
SBS	Chr4	35088827	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g58980
SBS	Chr5	24031616	G-A	HET	INTERGENIC
SBS	Chr6	23503381	C-A	HET	UTR_3_PRIME
SBS	Chr6	3286456	C-T	HOMO	INTERGENIC
SBS	Chr6	3286457	C-T	HOMO	INTERGENIC
SBS	Chr7	11352522	C-T	HET	INTERGENIC
SBS	Chr7	17885663	A-T	HET	INTRON
SBS	Chr7	25892024	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g43200
SBS	Chr7	9835008	C-T	HET	INTERGENIC
SBS	Chr8	770796	T-C	HET	UTR_5_PRIME
SBS	Chr8	9601478	C-T	HET	INTERGENIC
SBS	Chr9	16485323	G-A	HOMO	INTRON
SBS	Chr9	9872912	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1037795	1037796	1
Deletion	Chr7	2198099	2198120	21
Deletion	Chr9	3491975	3491976	1
Deletion	Chr3	5363560	5363570	10
Deletion	Chr6	9759362	9759373	11	LOC_Os06g16850
Deletion	Chr1	10362395	11592486	1230091	175
Deletion	Chr2	11311985	11311986	1
Deletion	Chr9	11757658	11757661	3
Deletion	Chr6	11905607	11905608	1	LOC_Os06g20660
Deletion	Chr2	11989684	11989693	9
Deletion	Chr11	12611093	12611094	1
Deletion	Chr1	12671405	12671663	258
Deletion	Chr2	13441569	13441571	2	LOC_Os02g22530
Deletion	Chr1	13998737	13998738	1
Deletion	Chr7	15343683	15343687	4
Deletion	Chr10	16382690	16382692	2
Deletion	Chr3	17957902	17957905	3
Deletion	Chr11	18732891	18732900	9	LOC_Os11g31880
Deletion	Chr12	24364974	24364975	1
Deletion	Chr11	25231409	25231426	17
Deletion	Chr4	28021576	28021580	4	LOC_Os04g47180
Deletion	Chr6	31078305	31078331	26
Deletion	Chr1	39829447	39830928	1481	LOC_Os01g68570
Deletion	Chr1	40603869	40603884	15

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	6636712	6636713	2
Insertion	Chr11	871553	871554	2
Insertion	Chr9	16220472	16220474	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr1	10108404	10346440
Inversion	Chr1	10109494	10362401
Inversion	Chr1	10351837	11537518
Inversion	Chr1	11537511	11592480
Inversion	Chr12	20487000	20487173

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	1959741	Chr1	10109483	LOC_Os02g04440
Translocation	Chr2	1959752	Chr1	10108411	LOC_Os02g04440
Translocation	Chr6	20213453	Chr1	12671643	2
Translocation	Chr6	20213454	Chr1	12671434	2
Translocation	Chr6	23463394	Chr3	29226748	LOC_Os06g39515

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