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Mutant Information

Mutant Name	FN1443-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1443-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22271234	G-T	HET	INTERGENIC
SBS	Chr1	25651825	G-A	HET	INTERGENIC
SBS	Chr1	29094342	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g50650
SBS	Chr10	12443024	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24290
SBS	Chr10	17240761	A-G	HOMO	INTERGENIC
SBS	Chr10	18380439	G-A	HET	INTERGENIC
SBS	Chr10	21013928	G-T	HET	INTERGENIC
SBS	Chr10	21013929	C-G	HET	INTERGENIC
SBS	Chr10	8388355	T-A	HET	INTRON
SBS	Chr11	14114199	T-C	HOMO	INTERGENIC
SBS	Chr11	28829005	C-A	HET	INTERGENIC
SBS	Chr11	7762528	T-C	HET	INTERGENIC
SBS	Chr12	10179181	C-A	HET	INTERGENIC
SBS	Chr12	13109040	A-G	HET	INTERGENIC
SBS	Chr12	24540561	G-A	HET	INTERGENIC
SBS	Chr2	23501150	T-G	HET	INTERGENIC
SBS	Chr2	26710475	C-A	HET	INTRON
SBS	Chr2	29612268	T-A	HET	INTRON
SBS	Chr2	33733056	C-T	HET	STOP_GAINED	LOC_Os02g55070
SBS	Chr2	9261449	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g16270
SBS	Chr3	16746909	A-G	HET	INTERGENIC
SBS	Chr3	16746910	A-T	HET	INTERGENIC
SBS	Chr4	19003237	G-A	HOMO	INTERGENIC
SBS	Chr5	12000024	C-T	HET	INTERGENIC
SBS	Chr5	18616703	C-A	HET	INTERGENIC
SBS	Chr5	27860890	T-G	HET	INTRON
SBS	Chr5	7679900	C-T	HET	INTERGENIC
SBS	Chr6	13573246	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g23250
SBS	Chr6	15157477	G-T	HET	INTERGENIC
SBS	Chr6	15204492	T-C	HET	INTERGENIC
SBS	Chr6	15642525	T-A	HET	INTERGENIC
SBS	Chr6	16965851	G-T	HET	INTERGENIC
SBS	Chr6	23767627	C-T	HET	INTERGENIC
SBS	Chr6	9367033	T-A	HET	UTR_3_PRIME
SBS	Chr6	9445914	C-A	HET	INTERGENIC
SBS	Chr6	9445915	C-A	HET	INTERGENIC
SBS	Chr7	13669211	C-T	HET	INTRON
SBS	Chr7	16443538	G-C	HOMO	INTERGENIC
SBS	Chr7	26464165	G-T	HET	INTERGENIC
SBS	Chr7	8718991	A-C	HOMO	INTERGENIC
SBS	Chr8	22013514	G-T	HET	INTERGENIC
SBS	Chr8	26261737	C-T	HET	INTRON
SBS	Chr9	10313405	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	1558067	C-T	HET	INTERGENIC
SBS	Chr9	3899692	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07730
SBS	Chr9	6735634	G-C	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3462559	3462563	4	LOC_Os02g06870
Deletion	Chr1	4368463	4368465	2
Deletion	Chr8	5477130	5489206	12076	3
Deletion	Chr12	6950858	6950860	2
Deletion	Chr2	7047637	7047640	3
Deletion	Chr1	9472461	9472464	3
Deletion	Chr5	9995151	9995155	4	LOC_Os05g17410
Deletion	Chr2	10438804	10438811	7	LOC_Os02g17990
Deletion	Chr12	12739556	12739557	1
Deletion	Chr10	14550121	14550125	4
Deletion	Chr12	17274208	17274215	7
Deletion	Chr10	17894271	17894272	1
Deletion	Chr12	18067029	18067035	6
Deletion	Chr5	21761139	21761140	1
Deletion	Chr9	22327743	22327748	5	LOC_Os09g38870
Deletion	Chr6	23152789	23152792	3
Deletion	Chr5	24244843	24244846	3	LOC_Os05g41400
Deletion	Chr1	24313248	24313250	2
Deletion	Chr2	24767001	25188000	421000	55
Deletion	Chr4	26745647	26745654	7
Deletion	Chr7	27947942	27947943	1	LOC_Os07g46760
Deletion	Chr5	28881468	28881470	2
Deletion	Chr2	32178360	32419952	241592	40
Deletion	Chr1	40554645	40554646	1	LOC_Os01g70060
Deletion	Chr1	42135984	42135985	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	714465	714465	1
Insertion	Chr12	1422485	1422485	1
Insertion	Chr12	2611697	2611700	4
Insertion	Chr9	14338957	14338958	2
Insertion	Chr9	17891330	17891330	1

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3250052	Chr3	24406169

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