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Mutant Information

Mutant Name	FN1446-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1446-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13575968	C-T	HOMO	INTERGENIC
SBS	Chr1	13993148	A-G	HET	INTERGENIC
SBS	Chr1	16562424	A-C	HOMO	INTERGENIC
SBS	Chr2	17240848	C-G	HET	INTERGENIC
SBS	Chr2	34791291	C-A	HET	INTRON
SBS	Chr3	2092184	A-G	HOMO	INTERGENIC
SBS	Chr3	15240194	C-T	HET	INTRON
SBS	Chr3	16196465	G-A	HET	INTERGENIC
SBS	Chr3	27979379	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	10730314	C-A	HET	INTERGENIC
SBS	Chr4	19993380	T-A	HET	INTERGENIC
SBS	Chr5	6883918	C-T	HET	INTRON
SBS	Chr5	9313269	G-T	HET	INTRON
SBS	Chr5	16826067	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g28680
SBS	Chr5	19628573	C-A	HET	INTERGENIC
SBS	Chr5	21768905	C-T	HET	INTERGENIC
SBS	Chr6	278195	A-G	HET	INTRON
SBS	Chr6	5469111	C-T	HET	INTRON
SBS	Chr6	23454462	C-T	HET	INTERGENIC
SBS	Chr6	30070429	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr7	2596545	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05550
SBS	Chr7	9531822	C-T	HOMO	UTR_5_PRIME
SBS	Chr7	11444021	C-T	HOMO	INTERGENIC
SBS	Chr8	18290605	G-A	HOMO	INTERGENIC
SBS	Chr9	7745935	G-A	HET	INTERGENIC
SBS	Chr9	8764075	G-A	HET	INTERGENIC
SBS	Chr9	16993693	A-G	HOMO	SPLICE_SITE_REGION
SBS	Chr9	17982805	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g29570
SBS	Chr10	566368	C-A	HET	INTERGENIC
SBS	Chr10	6399026	C-T	HET	INTERGENIC
SBS	Chr10	19326489	T-G	HET	INTERGENIC
SBS	Chr11	5369142	T-C	HOMO	INTERGENIC
SBS	Chr11	13540695	C-T	HET	INTERGENIC
SBS	Chr11	15264208	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26650
SBS	Chr11	28694335	G-T	HET	INTERGENIC
SBS	Chr12	3873675	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	6733250	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g12260
SBS	Chr12	12631597	T-A	HET	INTERGENIC
SBS	Chr12	19964978	A-G	HET	INTERGENIC
SBS	Chr12	22378261	C-T	HET	INTERGENIC
SBS	Chr12	26049041	A-T	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	287001	616000	329000	51
Deletion	Chr10	411707	411708	1
Deletion	Chr6	1317190	1317195	5
Deletion	Chr3	2202986	2202987	1
Deletion	Chr1	2379537	2379544	7
Deletion	Chr12	3745048	3745052	4	LOC_Os12g07530
Deletion	Chr3	4035361	4035373	12
Deletion	Chr2	7217584	7217587	3
Deletion	Chr5	10898096	10898097	1
Deletion	Chr6	14546078	14546099	21
Deletion	Chr9	17058083	17058084	1
Deletion	Chr9	17396184	17396193	9
Deletion	Chr1	23327221	23327222	1
Deletion	Chr5	23507453	23507463	10
Deletion	Chr2	27570526	27570528	2
Deletion	Chr3	27975112	27975127	15
Deletion	Chr4	29998850	29998851	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	12624213	12624214	2
Insertion	Chr2	17326875	17326876	2
Insertion	Chr11	3710388	3710389	2
Insertion	Chr11	18676845	18676845	1
Insertion	Chr12	12064464	12064464	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	21823640	21864201	2

No Translocation

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