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Mutant Information

Mutant Name	FN1463-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1463-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	319576	A-G	HET	INTERGENIC
SBS	Chr1	1814856	C-A	HOMO	INTERGENIC
SBS	Chr1	2141408	T-C	HOMO	INTRON
SBS	Chr1	30877811	A-G	HET	INTERGENIC
SBS	Chr1	39945586	T-C	HET	INTERGENIC
SBS	Chr2	9921801	G-C	HET	INTERGENIC
SBS	Chr3	3978204	G-A	HOMO	INTERGENIC
SBS	Chr3	10202659	T-A	HOMO	INTERGENIC
SBS	Chr3	33127137	C-A	HOMO	INTERGENIC
SBS	Chr4	5739657	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g10569
SBS	Chr4	7800916	T-A	HOMO	INTERGENIC
SBS	Chr4	14855947	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g25640
SBS	Chr4	22724307	C-T	HET	INTERGENIC
SBS	Chr5	6519464	T-A	HOMO	INTERGENIC
SBS	Chr5	11237878	C-T	HOMO	STOP_GAINED	LOC_Os05g19350
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr7	6048921	A-T	HET	INTERGENIC
SBS	Chr7	7779782	T-G	HET	INTERGENIC
SBS	Chr7	9775462	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16650
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr8	12628816	G-A	HET	INTRON
SBS	Chr8	13034032	G-C	HET	SYNONYMOUS_CODING
SBS	Chr8	21974167	G-A	HOMO	START_GAINED	LOC_Os08g34895
SBS	Chr9	1069778	T-G	HET	INTERGENIC
SBS	Chr9	9271519	C-T	HET	INTERGENIC
SBS	Chr9	17474300	C-T	HET	INTERGENIC
SBS	Chr10	1823921	G-A	HET	INTERGENIC
SBS	Chr10	1823922	C-A	HET	INTERGENIC
SBS	Chr10	10508642	C-T	HET	INTERGENIC
SBS	Chr12	4311891	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g08500
SBS	Chr12	7933447	C-A	HET	INTERGENIC
SBS	Chr12	10159735	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g17740
SBS	Chr12	26106709	A-G	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1448857	1448860	3
Deletion	Chr8	3412758	3412771	13	LOC_Os08g06180
Deletion	Chr11	4483001	4525000	42000	8
Deletion	Chr2	8368359	8368362	3
Deletion	Chr5	8655628	8655638	10	LOC_Os05g15260
Deletion	Chr9	9098577	9098580	3
Deletion	Chr11	9222409	9222437	28
Deletion	Chr11	10472843	10472845	2
Deletion	Chr4	13123690	13123691	1
Deletion	Chr12	14782058	14782062	4	LOC_Os12g25530
Deletion	Chr2	14986001	15027000	41000	3
Deletion	Chr10	15427001	15925000	498000	84
Deletion	Chr4	17198875	17198934	59
Deletion	Chr9	20256794	20256805	11
Deletion	Chr7	20384955	20384958	3
Deletion	Chr12	21146851	21146856	5
Deletion	Chr12	22531360	22531365	5	LOC_Os12g36770
Deletion	Chr3	23173222	23173231	9	LOC_Os03g41710
Deletion	Chr8	23176737	23176757	20
Deletion	Chr12	26194535	26194546	11	LOC_Os12g42220
Deletion	Chr3	28140939	28140943	4	LOC_Os03g49430
Deletion	Chr1	34576311	34576352	41

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	27647359	27647360	2
Insertion	Chr2	23925763	23925763	1
Insertion	Chr3	21741766	21741767	2
Insertion	Chr4	16781947	16781948	2
Insertion	Chr7	8045906	8045909	4
Insertion	Chr11	22223380	22223383	4
Insertion	Chr11	27699077	27699078	2
Insertion	Chr12	23521192	23521195	4	LOC_Os12g38320

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3926660	3976479	LOC_Os06g08090
Inversion	Chr6	13176361	13408768	LOC_Os06g22960
Inversion	Chr6	13176381	13408784	LOC_Os06g22960
Inversion	Chr6	14198731	14454824	LOC_Os06g24250
Inversion	Chr10	15013277	15427224	LOC_Os10g29660
Inversion	Chr1	40907142	41174134	LOC_Os01g70660
Inversion	Chr1	40907164	41174159	LOC_Os01g70660

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	360094	Chr2	532399	LOC_Os08g01600
Translocation	Chr3	4749055	Chr1	29064641	LOC_Os03g09120
Translocation	Chr8	18631943	Chr7	16356425	LOC_Os07g28050

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