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Mutant Information

Mutant Name	FN1466-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1466-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11420025	T-C	Homo	INTRON
SBS	Chr1	15822758	T-A	HET	INTERGENIC
SBS	Chr1	2019320	T-A	HET	INTERGENIC
SBS	Chr1	28749998	G-T	HET	INTRON
SBS	Chr1	28750001	A-G	HET	INTRON
SBS	Chr10	10043080	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g20020
SBS	Chr10	17118894	A-G	HET	SYNONYMOUS_CODING
SBS	Chr10	2484291	G-A	Homo	INTRON
SBS	Chr11	27698016	C-T	HET	INTERGENIC
SBS	Chr11	679034	G-A	Homo	INTERGENIC
SBS	Chr12	13238514	A-T	HET	INTERGENIC
SBS	Chr12	23202868	G-A	HET	INTERGENIC
SBS	Chr2	32625278	A-G	HET	INTERGENIC
SBS	Chr2	9042493	G-A	Homo	INTRON
SBS	Chr3	25747445	A-G	HET	INTRON
SBS	Chr4	17184290	T-C	HET	INTERGENIC
SBS	Chr4	17576238	G-A	HET	INTERGENIC
SBS	Chr4	18614177	G-A	HET	INTERGENIC
SBS	Chr4	2583469	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05180
SBS	Chr4	27621532	G-A	Homo	INTERGENIC
SBS	Chr4	3319164	A-T	Homo	INTRON
SBS	Chr5	3899709	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g07330
SBS	Chr5	596373	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g02040
SBS	Chr6	11942741	G-A	HET	INTRON
SBS	Chr7	28112975	G-A	HET	INTERGENIC
SBS	Chr7	6785412	A-T	Homo	INTERGENIC
SBS	Chr8	19072053	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30900
SBS	Chr8	4197182	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g07480

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2103035	2103037	2
Deletion	Chr10	2320214	2330155	9941	LOC_Os10g04810
Deletion	Chr9	2442093	2442094	1
Deletion	Chr5	5129820	5129821	1
Deletion	Chr7	5736665	5736671	6
Deletion	Chr10	6560824	6560825	1
Deletion	Chr1	11835729	11835755	26	LOC_Os01g21210
Deletion	Chr12	12991177	12991185	8	LOC_Os12g22980
Deletion	Chr2	13620939	13635289	14350
Deletion	Chr12	14113858	14113859	1
Deletion	Chr4	14128543	14128544	1
Deletion	Chr6	14925418	14925427	9
Deletion	Chr2	16743566	16744086	520	LOC_Os02g28330
Deletion	Chr2	16789973	16789982	9	LOC_Os02g28400
Deletion	Chr8	17905574	17905578	4	LOC_Os08g29200
Deletion	Chr3	18306001	18427000	121000	17
Deletion	Chr3	20101450	20101451	1
Deletion	Chr3	20541202	20541203	1
Deletion	Chr10	22384013	22384025	12
Deletion	Chr10	22849413	22849414	1
Deletion	Chr9	22978001	23013000	35000	6
Deletion	Chr8	23826109	23826390	281
Deletion	Chr8	23902321	23902327	6
Deletion	Chr7	24103192	24103198	6
Deletion	Chr11	24575358	24575482	124
Deletion	Chr3	24994608	24994610	2
Deletion	Chr3	25163323	25163328	5
Deletion	Chr8	25530398	25530400	2
Deletion	Chr11	25939426	25939445	19
Deletion	Chr8	25975756	25975783	27	LOC_Os08g41100
Deletion	Chr5	26212169	26212173	4	LOC_Os05g45140
Deletion	Chr7	26339271	26339341	70
Deletion	Chr2	28136309	28136328	19
Deletion	Chr6	30923107	30923108	1
Deletion	Chr1	41143680	41143683	3

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11005990	11005990	1	LOC_Os01g19450
Insertion	Chr1	28208037	28208037	1
Insertion	Chr1	37785629	37785629	1
Insertion	Chr10	12598029	12598089	61
Insertion	Chr11	11993691	11993691	1
Insertion	Chr12	4131798	4131813	16
Insertion	Chr4	25013786	25013817	32
Insertion	Chr5	12495322	12495322	1
Insertion	Chr6	5883097	5883097	1
Insertion	Chr7	4570092	4570093	2
Insertion	Chr8	21090259	21090262	4	LOC_Os08g33750
Insertion	Chr9	12637135	12637189	55
Insertion	Chr9	22367053	22367053	1
Insertion	Chr9	22463086	22463091	6

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	16993116	17133254	LOC_Os10g32730
Inversion	Chr1	20114074	21102014	LOC_Os01g36280
Inversion	Chr1	20114097	21078679	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	14855608	Chr1	38029221	LOC_Os01g65520
Translocation	Chr9	14855649	Chr1	38028443	LOC_Os01g65520

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