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Mutant Information

Mutant Name	FN1470-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1470-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6597992	C-T	HET	INTERGENIC
SBS	Chr1	17634181	G-A	HET	INTRON
SBS	Chr1	18445191	A-G	HET	INTERGENIC
SBS	Chr1	22035018	A-T	HET	INTERGENIC
SBS	Chr1	38613823	G-C	Homo	UTR_3_PRIME
SBS	Chr1	42421757	C-T	HET	UTR_3_PRIME
SBS	Chr2	34397341	T-A	HET	INTERGENIC
SBS	Chr3	4255670	C-A	HET	INTERGENIC
SBS	Chr3	33263607	C-T	Homo	INTERGENIC
SBS	Chr3	33666317	C-A	Homo	INTERGENIC
SBS	Chr3	33666318	C-A	Homo	INTERGENIC
SBS	Chr4	14831915	G-T	HET	INTERGENIC
SBS	Chr4	22230722	T-A	HET	INTERGENIC
SBS	Chr4	32885173	G-C	HET	INTERGENIC
SBS	Chr4	32886026	C-T	HET	INTERGENIC
SBS	Chr5	1339176	C-A	HET	INTERGENIC
SBS	Chr5	12295825	C-T	HET	START_GAINED	LOC_Os05g20914
SBS	Chr5	19382124	G-A	Homo	INTERGENIC
SBS	Chr5	20400484	T-C	Homo	INTERGENIC
SBS	Chr5	29121519	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	29249543	G-A	Homo	INTERGENIC
SBS	Chr6	7890957	G-A	Homo	INTERGENIC
SBS	Chr6	9462629	G-A	HET	INTERGENIC
SBS	Chr6	22259300	T-G	HET	UTR_5_PRIME
SBS	Chr6	23747039	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g39920
SBS	Chr6	26579328	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	26579329	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44060
SBS	Chr6	26799993	C-G	HET	INTERGENIC
SBS	Chr7	8569088	T-C	HET	INTERGENIC
SBS	Chr8	4026983	C-A	HET	INTRON
SBS	Chr8	18434902	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30010
SBS	Chr11	14920330	C-T	HET	SPLICE_SITE_REGION
SBS	Chr12	8531678	C-T	HET	INTERGENIC
SBS	Chr12	20498005	G-A	HET	UTR_5_PRIME
SBS	Chr12	20524499	T-C	HET	INTERGENIC
SBS	Chr12	20526536	C-A	HET	INTERGENIC
SBS	Chr12	20527521	A-C	HET	INTERGENIC
SBS	Chr12	20527573	G-A	HET	INTERGENIC
SBS	Chr12	20534731	C-T	HET	INTERGENIC
SBS	Chr12	20544757	A-G	HET	INTERGENIC
SBS	Chr12	20613172	C-G	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1997116	1997117	1
Deletion	Chr4	3808412	3808421	9	LOC_Os04g07170
Deletion	Chr6	4796198	4826004	29806	2
Deletion	Chr3	5369347	5369348	1
Deletion	Chr11	5439521	5439538	17
Deletion	Chr5	6409818	6409826	8	LOC_Os05g11340
Deletion	Chr7	6811796	6811853	57
Deletion	Chr8	8843533	8843534	1	LOC_Os08g14710
Deletion	Chr4	9334663	9334664	1
Deletion	Chr3	10549658	10549659	1
Deletion	Chr4	10918831	10918836	5
Deletion	Chr11	11670559	11670560	1
Deletion	Chr2	11779259	11779267	8	LOC_Os02g20010
Deletion	Chr11	11783013	11783021	8
Deletion	Chr6	13029500	13029502	2
Deletion	Chr5	13958800	13958812	12
Deletion	Chr10	14628716	14628720	4
Deletion	Chr1	15872429	15872434	5	LOC_Os01g28330
Deletion	Chr8	16691072	16691074	2
Deletion	Chr9	20947461	20947467	6	LOC_Os09g36300
Deletion	Chr2	22690001	22803000	113000	19
Deletion	Chr7	22746391	22746400	9
Deletion	Chr12	23130025	23130026	1
Deletion	Chr12	23629743	23629745	2
Deletion	Chr4	24253645	24253646	1
Deletion	Chr11	25427996	25427998	2
Deletion	Chr7	25597441	25597447	6
Deletion	Chr6	25993907	25993916	9
Deletion	Chr4	26142708	26142709	1
Deletion	Chr3	26582948	26582949	1
Deletion	Chr5	29214259	29214262	3	LOC_Os05g50910
Deletion	Chr1	30338304	30338320	16
Deletion	Chr2	33798551	33798552	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	13061771	13061772	2
Insertion	Chr1	35397321	35397321	1
Insertion	Chr1	1617651	1617652	2
Insertion	Chr1	22233857	22233858	2
Insertion	Chr1	34126304	34126311	8
Insertion	Chr1	34320225	34320238	14
Insertion	Chr2	694324	694324	1
Insertion	Chr2	5867587	5867588	2
Insertion	Chr3	16708020	16708021	2
Insertion	Chr4	6109454	6109459	6
Insertion	Chr5	25068453	25068453	1
Insertion	Chr8	23267555	23267574	20
Insertion	Chr8	28195168	28195194	27
Insertion	Chr12	17873985	17873985	1
Insertion	Chr12	22116757	22116762	6

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5627599	7039123
Inversion	Chr5	6423660	6466530
Inversion	Chr2	22689958	22805704	2

No Translocation

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