Search Nipponbare

Mutant Information

Mutant Name	FN1488-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1488-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21742558	C-T	HET	INTRON
SBS	Chr1	32952566	T-A	Homo	INTERGENIC
SBS	Chr10	11351597	G-T	HET	SPLICE_SITE_REGION
SBS	Chr10	2008946	A-T	HET	INTERGENIC
SBS	Chr10	5407042	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g09970
SBS	Chr11	10845900	C-T	Homo	INTRON
SBS	Chr11	4321471	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08230
SBS	Chr12	21300383	A-G	HET	INTERGENIC
SBS	Chr12	6566532	G-C	HET	INTERGENIC
SBS	Chr2	12263984	A-G	Homo	INTERGENIC
SBS	Chr2	24018353	T-C	Homo	INTERGENIC
SBS	Chr2	25130036	G-A	Homo	INTERGENIC
SBS	Chr2	25130038	T-A	Homo	INTERGENIC
SBS	Chr2	26939545	T-C	Homo	INTERGENIC
SBS	Chr2	27609006	C-A	HET	INTERGENIC
SBS	Chr3	17866126	A-T	HET	UTR_3_PRIME
SBS	Chr3	20053998	C-T	Homo	INTRON
SBS	Chr3	2100867	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr4	1312023	A-G	HET	INTERGENIC
SBS	Chr4	27866918	C-T	Homo	INTERGENIC
SBS	Chr5	12270422	C-A	Homo	INTERGENIC
SBS	Chr5	17176745	C-A	Homo	UTR_3_PRIME
SBS	Chr6	13420714	C-T	HET	INTRON
SBS	Chr7	13285150	G-A	HET	INTERGENIC
SBS	Chr7	13687595	G-A	HET	INTERGENIC
SBS	Chr7	19384498	C-T	Homo	INTRON
SBS	Chr7	2058107	G-T	HET	INTERGENIC
SBS	Chr8	13742031	G-T	Homo	INTRON
SBS	Chr8	13742032	A-T	Homo	INTRON
SBS	Chr8	14146283	C-G	HET	SYNONYMOUS_CODING
SBS	Chr9	20269090	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g34330
SBS	Chr9	3643453	A-G	HET	INTERGENIC

Deletions: 45

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	628755	628790	35
Deletion	Chr11	1483556	1483557	1
Deletion	Chr11	1498369	1498370	1
Deletion	Chr10	2285838	2287809	1971
Deletion	Chr11	3793275	3793299	24
Deletion	Chr4	4281657	4281665	8
Deletion	Chr11	5476122	5476146	24
Deletion	Chr7	6669607	6669608	1
Deletion	Chr12	8238326	8238327	1
Deletion	Chr6	8349815	8349829	14
Deletion	Chr12	8602897	8602898	1
Deletion	Chr9	9058670	9058809	139
Deletion	Chr9	10582264	10582269	5
Deletion	Chr9	10879365	10879402	37
Deletion	Chr5	12356799	12356800	1	LOC_Os05g21000
Deletion	Chr11	14054829	14054830	1
Deletion	Chr7	14673526	14673528	2
Deletion	Chr7	15755722	15755724	2	LOC_Os07g27150
Deletion	Chr7	16353850	16353852	2
Deletion	Chr11	16402986	16402988	2
Deletion	Chr3	17866283	17869259	2976
Deletion	Chr3	18392873	18392874	1
Deletion	Chr2	18561505	18561518	13
Deletion	Chr3	19961395	19961399	4
Deletion	Chr12	20268940	20268942	2
Deletion	Chr12	20353570	20353583	13
Deletion	Chr5	21073837	21073838	1
Deletion	Chr7	21881014	21881015	1
Deletion	Chr6	23217509	23217510	1
Deletion	Chr12	23735696	23735729	33
Deletion	Chr12	24215377	24215379	2
Deletion	Chr6	26102884	26102887	3
Deletion	Chr11	26394514	26394515	1
Deletion	Chr11	26590995	26590996	1
Deletion	Chr2	27055578	27055580	2
Deletion	Chr5	27160672	27160694	22
Deletion	Chr2	27516494	27516496	2
Deletion	Chr3	28075037	28075039	2
Deletion	Chr2	28400932	28400934	2
Deletion	Chr5	29090880	29090891	11
Deletion	Chr1	32220399	32220401	2
Deletion	Chr2	32391894	32391895	1	LOC_Os02g52960
Deletion	Chr2	33160894	33160914	20	LOC_Os02g54120
Deletion	Chr1	39497259	39497262	3
Deletion	Chr1	42527690	42532115	4425	LOC_Os01g73380

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4240252	4240255	4
Insertion	Chr1	4810002	4810002	1
Insertion	Chr11	13608666	13608666	1
Insertion	Chr11	18465026	18465068	43	LOC_Os11g31590
Insertion	Chr2	6051807	6051807	1
Insertion	Chr2	7719174	7719174	1	LOC_Os02g14130
Insertion	Chr3	15061050	15061050	1
Insertion	Chr3	22910304	22910309	6
Insertion	Chr4	18330057	18330068	12
Insertion	Chr4	3988999	3988999	1
Insertion	Chr5	194174	194177	4
Insertion	Chr5	29411337	29411378	42

No Inversion

No Translocation

Main menu