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Mutant Information

Mutant Name	FN1512-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1512-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10148008	A-G	HET	INTERGENIC
SBS	Chr1	20847287	C-T	HET	INTRON
SBS	Chr1	27416089	C-G	Homo	INTERGENIC
SBS	Chr1	32570228	A-G	Homo	INTERGENIC
SBS	Chr1	3960712	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	3967795	C-T	HET	INTERGENIC
SBS	Chr11	10338458	T-G	HET	SPLICE_SITE_REGION
SBS	Chr11	10339786	C-A	HET	INTERGENIC
SBS	Chr11	18622476	C-G	HET	INTERGENIC
SBS	Chr11	24007329	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40249
SBS	Chr11	28995722	T-C	HET	INTRON
SBS	Chr12	12677782	G-A	Homo	INTERGENIC
SBS	Chr2	11770611	G-A	HET	INTERGENIC
SBS	Chr2	11770634	G-A	HET	INTERGENIC
SBS	Chr2	23761073	A-T	Homo	INTERGENIC
SBS	Chr2	27115408	A-T	HET	INTERGENIC
SBS	Chr2	34049971	A-T	HET	INTERGENIC
SBS	Chr3	1038935	C-G	HET	INTERGENIC
SBS	Chr3	346461	C-T	Homo	INTRON
SBS	Chr4	12407648	A-G	HET	INTRON
SBS	Chr4	17503578	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g29440
SBS	Chr4	26806501	C-G	HET	UTR_5_PRIME
SBS	Chr4	29231856	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g49040
SBS	Chr4	29231874	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g49040
SBS	Chr5	20022563	C-A	HET	INTERGENIC
SBS	Chr5	20352628	C-G	Homo	INTERGENIC
SBS	Chr5	5767505	A-G	HET	INTERGENIC
SBS	Chr6	16595957	T-A	Homo	INTRON
SBS	Chr6	20565593	G-A	Homo	INTERGENIC
SBS	Chr6	27824822	A-G	HET	INTRON
SBS	Chr6	30380626	T-A	HET	INTRON
SBS	Chr6	31199284	G-A	HET	INTERGENIC
SBS	Chr7	12326589	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g22050
SBS	Chr7	13176159	C-T	HET	INTERGENIC
SBS	Chr7	21347112	T-C	HET	INTERGENIC
SBS	Chr7	21365721	G-A	HET	INTRON
SBS	Chr7	23382986	A-T	HET	INTERGENIC
SBS	Chr8	13612653	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	17647013	T-C	Homo	INTERGENIC
SBS	Chr8	27417099	T-A	HET	INTERGENIC
SBS	Chr9	16211592	C-T	HET	INTERGENIC
SBS	Chr9	5495925	A-T	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	863078	863084	6
Deletion	Chr9	1682579	1682580	1
Deletion	Chr2	1894936	1894939	3
Deletion	Chr7	3055001	3105000	50000	8
Deletion	Chr12	4406968	4406973	5
Deletion	Chr10	5320508	5320509	1
Deletion	Chr1	8029594	8029615	21
Deletion	Chr12	9213418	9213420	2
Deletion	Chr9	10399185	10399186	1
Deletion	Chr11	11149105	11149120	15
Deletion	Chr11	11769443	11769444	1
Deletion	Chr6	14916251	14916253	2
Deletion	Chr11	16970635	16970641	6
Deletion	Chr9	17644037	17644046	9
Deletion	Chr3	18733812	18733814	2
Deletion	Chr10	19465898	19465903	5
Deletion	Chr2	19568211	19568216	5
Deletion	Chr8	19749001	19798000	49000	7
Deletion	Chr7	19847195	19847196	1
Deletion	Chr6	19914425	19914426	1
Deletion	Chr8	20325970	20325971	1
Deletion	Chr1	20799529	20799539	10	LOC_Os01g37240
Deletion	Chr3	21149145	21149150	5
Deletion	Chr9	21756106	21756112	6
Deletion	Chr11	25735787	25761999	26212	6
Deletion	Chr4	26408317	26408330	13
Deletion	Chr4	26627926	26627929	3
Deletion	Chr5	26892035	26892053	18
Deletion	Chr11	28621734	28621735	1	LOC_Os11g47443
Deletion	Chr11	28884331	28884334	3
Deletion	Chr2	33059367	33059389	22
Deletion	Chr1	35186043	35186044	1	LOC_Os01g60860
Deletion	Chr1	40330953	40330954	1

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	16997429	16997431	3
Insertion	Chr10	19118974	19118974	1
Insertion	Chr11	15681965	15681993	29
Insertion	Chr12	21360302	21360302	1
Insertion	Chr12	26546719	26546722	4
Insertion	Chr12	27177418	27177422	5
Insertion	Chr2	6329556	6329559	4
Insertion	Chr3	12667394	12667394	1
Insertion	Chr3	1519	1594	76
Insertion	Chr3	23423067	23423070	4
Insertion	Chr5	22246987	22246989	3
Insertion	Chr7	20728504	20728576	73
Insertion	Chr7	26828986	26828986	1
Insertion	Chr8	12722234	12722284	51

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1797843	1860065
Inversion	Chr1	13100576	14544224
Inversion	Chr1	13281792	14080273	2
Inversion	Chr1	13667268	14544215	LOC_Os01g24260
Inversion	Chr7	20116368	20912768	2
Inversion	Chr3	26394529	27056321

No Translocation

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