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Mutant Information

Mutant Name	FN1514-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1514-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 54

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8090802	G-A	HET	INTERGENIC
SBS	Chr10	16607758	C-A	Homo	INTERGENIC
SBS	Chr10	201534	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01330
SBS	Chr11	15990743	T-A	HET	INTERGENIC
SBS	Chr11	16140202	T-C	HET	INTERGENIC
SBS	Chr11	3274761	G-A	HET	INTERGENIC
SBS	Chr12	22997301	C-T	HET	STOP_GAINED	LOC_Os12g37470
SBS	Chr12	25546543	C-T	HET	INTERGENIC
SBS	Chr12	26527945	C-T	HET	INTERGENIC
SBS	Chr12	26846070	G-C	HET	INTERGENIC
SBS	Chr12	27201087	G-A	HET	INTERGENIC
SBS	Chr12	3881073	G-A	Homo	INTRON
SBS	Chr12	5752453	T-C	HET	INTRON
SBS	Chr12	9469429	A-G	HET	INTERGENIC
SBS	Chr2	14922047	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr2	18112816	A-G	Homo	INTRON
SBS	Chr2	23553266	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	29823842	T-C	HET	INTRON
SBS	Chr2	35475567	G-T	HET	INTERGENIC
SBS	Chr2	35773606	A-G	HET	INTERGENIC
SBS	Chr3	14961494	C-A	HET	INTERGENIC
SBS	Chr3	17907389	T-C	HET	INTERGENIC
SBS	Chr3	19117932	G-A	HET	INTERGENIC
SBS	Chr3	2813158	G-A	HET	INTRON
SBS	Chr3	30997574	G-A	Homo	INTERGENIC
SBS	Chr3	5048986	A-T	HET	UTR_3_PRIME
SBS	Chr3	5048988	A-G	HET	UTR_3_PRIME
SBS	Chr3	5056695	A-G	HET	INTERGENIC
SBS	Chr4	14317018	A-C	HET	INTERGENIC
SBS	Chr4	31587898	C-T	HET	INTRON
SBS	Chr4	33457528	C-T	HET	INTERGENIC
SBS	Chr4	34183835	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57460
SBS	Chr4	4747211	G-A	HET	INTERGENIC
SBS	Chr4	970506	A-G	HET	INTERGENIC
SBS	Chr6	12672722	C-T	Homo	INTERGENIC
SBS	Chr6	1698863	A-C	Homo	INTERGENIC
SBS	Chr6	17652576	T-A	Homo	INTERGENIC
SBS	Chr6	3361757	C-T	HET	INTRON
SBS	Chr7	11926411	C-T	HET	INTRON
SBS	Chr7	15956030	A-G	Homo	INTERGENIC
SBS	Chr7	1885820	T-C	HET	INTERGENIC
SBS	Chr7	8437178	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	28288483	C-T	Homo	INTERGENIC
SBS	Chr8	6205969	C-T	HET	UTR_5_PRIME
SBS	Chr9	13805119	C-G	HET	INTRON
SBS	Chr9	1385011	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	18604632	G-T	HET	INTERGENIC
SBS	Chr9	1922593	T-C	HET	INTERGENIC
SBS	Chr9	20875543	T-A	HET	INTERGENIC
SBS	Chr9	5356654	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09860
SBS	Chr9	5356657	C-T	HET	STOP_GAINED	LOC_Os09g09860
SBS	Chr9	6341862	T-G	HET	INTRON
SBS	Chr9	7847293	C-T	HET	INTERGENIC
SBS	Chr9	88258	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01060

Deletions: 49

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	873113	873117	4
Deletion	Chr4	1191208	1191222	14
Deletion	Chr6	4063511	4063548	37	LOC_Os06g08360
Deletion	Chr3	5018492	5018497	5
Deletion	Chr4	5021409	5021411	2
Deletion	Chr9	5364586	5364605	19	LOC_Os09g09870
Deletion	Chr3	6623928	6623930	2
Deletion	Chr11	7643001	7720000	77000	10
Deletion	Chr5	9181533	9181534	1
Deletion	Chr7	9457039	9457040	1
Deletion	Chr9	9964634	9964637	3
Deletion	Chr11	10630214	10630219	5
Deletion	Chr6	11088113	11088114	1
Deletion	Chr12	11379066	11379067	1
Deletion	Chr12	11622133	11622138	5
Deletion	Chr12	11637665	11637666	1
Deletion	Chr12	12276598	12276617	19	LOC_Os12g21810
Deletion	Chr11	12315140	12315295	155
Deletion	Chr1	12945458	12945460	2
Deletion	Chr3	13585056	13585057	1
Deletion	Chr8	13758559	13758560	1
Deletion	Chr1	13837859	13837861	2
Deletion	Chr3	14274349	14274350	1
Deletion	Chr8	14433029	14433063	34
Deletion	Chr3	14614914	14614920	6
Deletion	Chr4	14926925	14926939	14
Deletion	Chr2	15982298	15984167	1869
Deletion	Chr12	16027208	16027209	1
Deletion	Chr9	16562308	16562309	1
Deletion	Chr11	16684297	16684331	34
Deletion	Chr12	16895019	16895029	10
Deletion	Chr8	16925123	16928391	3268	LOC_Os08g27790
Deletion	Chr10	17119661	17119685	24
Deletion	Chr5	17228704	17234161	5457	LOC_Os05g29780
Deletion	Chr12	17461941	17461942	1
Deletion	Chr8	17964425	17964451	26
Deletion	Chr6	19659024	19659025	1
Deletion	Chr2	20696562	20696570	8
Deletion	Chr10	21348831	21348849	18
Deletion	Chr4	21582900	21582916	16
Deletion	Chr7	21698685	21698693	8
Deletion	Chr5	22701209	22701213	4
Deletion	Chr7	23847848	23847855	7
Deletion	Chr5	25428218	25428219	1
Deletion	Chr12	25521561	25521562	1
Deletion	Chr4	27050849	27050852	3
Deletion	Chr8	28094716	28094728	12	LOC_Os08g44700
Deletion	Chr5	28297593	28297594	1
Deletion	Chr2	29803973	29803984	11

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	30684929	30684930	2
Insertion	Chr1	34456218	34456218	1
Insertion	Chr10	16226519	16226520	2
Insertion	Chr10	20546495	20546495	1
Insertion	Chr11	22107950	22107955	6	LOC_Os11g37430
Insertion	Chr2	17832814	17832828	15
Insertion	Chr3	1263308	1263308	1
Insertion	Chr3	19575362	19575439	78
Insertion	Chr3	6553764	6553773	10
Insertion	Chr3	7939365	7939373	9	LOC_Os03g14615
Insertion	Chr4	5472791	5472791	1
Insertion	Chr6	22182993	22183001	9
Insertion	Chr7	12925214	12925235	22
Insertion	Chr7	18898804	18898804	1
Insertion	Chr8	24481453	24481482	30
Insertion	Chr8	2884665	2884665	1
Insertion	Chr9	15853656	15853703	48

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7213520	7720228
Inversion	Chr2	13416055	13456470	LOC_Os02g22570
Inversion	Chr12	17346668	17346926
Inversion	Chr5	25529331	25535980

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7213509	Chr2	13371802
Translocation	Chr11	7427059	Chr2	15984201
Translocation	Chr11	7642485	Chr2	13371806	LOC_Os11g13850
Translocation	Chr12	21090321	Chr4	10335314	2
Translocation	Chr12	21094577	Chr4	10335311	2
Translocation	Chr12	21094717	Chr7	24651099	LOC_Os12g34740
Translocation	Chr12	21094718	Chr7	24651100	LOC_Os12g34740

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