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Mutant Information

Mutant Name	FN1538-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1538-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10637884	C-A	Homo	INTERGENIC
SBS	Chr1	23977260	T-C	HET	INTRON
SBS	Chr1	26479235	A-T	HET	INTERGENIC
SBS	Chr10	15068091	G-A	HET	INTERGENIC
SBS	Chr10	4878777	G-A	HET	INTERGENIC
SBS	Chr10	5898301	C-A	Homo	INTERGENIC
SBS	Chr11	15816209	G-A	Homo	INTRON
SBS	Chr11	24871543	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	9453563	A-G	HET	INTERGENIC
SBS	Chr12	24251601	G-C	Homo	INTRON
SBS	Chr12	9864108	C-A	Homo	INTERGENIC
SBS	Chr2	23478053	G-A	HET	INTERGENIC
SBS	Chr2	29134244	A-G	Homo	INTERGENIC
SBS	Chr2	8152735	C-T	HET	INTERGENIC
SBS	Chr3	19081260	T-C	HET	INTERGENIC
SBS	Chr3	25577455	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	34371142	G-A	HET	INTERGENIC
SBS	Chr3	35013132	A-G	HET	INTRON
SBS	Chr3	4881196	C-T	HET	INTERGENIC
SBS	Chr5	10477968	A-G	HET	INTERGENIC
SBS	Chr5	5878648	C-A	Homo	INTERGENIC
SBS	Chr6	20471084	T-C	HET	INTERGENIC
SBS	Chr6	22681695	G-A	HET	INTERGENIC
SBS	Chr6	5405356	T-C	Homo	INTRON
SBS	Chr6	5407426	T-C	Homo	INTERGENIC
SBS	Chr7	3369605	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g06890
SBS	Chr8	16743012	T-A	Homo	INTERGENIC
SBS	Chr8	19854187	G-A	Homo	INTERGENIC
SBS	Chr8	7381911	G-A	HET	INTERGENIC
SBS	Chr9	1684862	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	1684863	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g03410

Deletions: 43

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	642590	642598	8
Deletion	Chr8	987974	987976	2
Deletion	Chr10	2199069	2199077	8
Deletion	Chr6	2755843	2755845	2
Deletion	Chr4	3404302	3404307	5
Deletion	Chr10	3846194	3846196	2
Deletion	Chr2	4272364	4272365	1
Deletion	Chr10	5386645	5386651	6	LOC_Os10g09940
Deletion	Chr10	5719152	5719153	1
Deletion	Chr2	7718685	7718690	5
Deletion	Chr8	8652050	8652130	80
Deletion	Chr11	9328462	9328465	3	LOC_Os11g16800
Deletion	Chr3	11036709	11036712	3
Deletion	Chr1	12097019	12097025	6
Deletion	Chr9	12576803	12576816	13
Deletion	Chr5	12698620	12698625	5
Deletion	Chr8	12707210	12707211	1
Deletion	Chr9	13581219	13581221	2	LOC_Os09g22510
Deletion	Chr4	15495314	15495327	13
Deletion	Chr2	16873953	16879577	5624	LOC_Os02g28520
Deletion	Chr9	17849630	17849647	17
Deletion	Chr4	17931001	18014000	83000	14
Deletion	Chr9	18205026	18205036	10
Deletion	Chr4	18352594	18352596	2
Deletion	Chr9	20618435	20618444	9
Deletion	Chr6	20971837	20971861	24	LOC_Os06g35940
Deletion	Chr12	21510886	21510887	1
Deletion	Chr4	21637706	21637717	11
Deletion	Chr8	21900832	21900890	58
Deletion	Chr10	22588135	22588137	2
Deletion	Chr6	22711001	22794000	83000	13
Deletion	Chr7	22869154	22869155	1
Deletion	Chr1	23932390	23941815	9425	2
Deletion	Chr11	25198361	25198362	1
Deletion	Chr3	26887050	26887051	1
Deletion	Chr8	27263915	27263916	1
Deletion	Chr1	27829075	27829079	4
Deletion	Chr5	28248265	28248268	3
Deletion	Chr4	30875124	30875125	1
Deletion	Chr1	32205841	32205842	1
Deletion	Chr2	32323204	32323208	4	LOC_Os02g52860
Deletion	Chr4	33808242	33808244	2
Deletion	Chr3	34885572	34885582	10

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20121555	20121555	1
Insertion	Chr10	2919680	2919680	1
Insertion	Chr11	26799973	26799974	2
Insertion	Chr11	6666254	6666254	1
Insertion	Chr12	23039621	23039665	45
Insertion	Chr12	6752095	6752111	17
Insertion	Chr2	2106504	2106505	2	LOC_Os02g04680
Insertion	Chr2	33006906	33006907	2
Insertion	Chr2	35175745	35175746	2
Insertion	Chr3	18673295	18673295	1
Insertion	Chr3	21290123	21290123	1
Insertion	Chr5	20921055	20921056	2
Insertion	Chr7	21699879	21699900	22
Insertion	Chr7	28425797	28425797	1
Insertion	Chr8	14440936	14440936	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6701562	7084111	2
Inversion	Chr5	6701574	7084132	2

No Translocation

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