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Mutant Information

Mutant Name	FN1563-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1563-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17951280	A-T	Homo	INTRON
SBS	Chr1	28124056	G-A	HET	INTERGENIC
SBS	Chr1	34079544	G-A	Homo	INTERGENIC
SBS	Chr1	36861452	C-T	Homo	INTERGENIC
SBS	Chr1	9307313	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr10	12117486	G-A	Homo	INTERGENIC
SBS	Chr10	12590164	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g24530
SBS	Chr10	9198301	A-T	Homo	INTERGENIC
SBS	Chr11	15168301	A-G	Homo	INTERGENIC
SBS	Chr11	17093579	G-A	Homo	STOP_GAINED	LOC_Os11g29450
SBS	Chr11	25515776	G-A	Homo	INTERGENIC
SBS	Chr12	27143135	C-T	HET	INTERGENIC
SBS	Chr2	2137491	A-G	Homo	INTERGENIC
SBS	Chr2	2137493	T-A	Homo	INTERGENIC
SBS	Chr2	29551509	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g48290
SBS	Chr2	29551510	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	27054328	T-A	Homo	INTERGENIC
SBS	Chr4	12799540	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	17081042	T-C	HET	INTERGENIC
SBS	Chr5	1936660	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g04250
SBS	Chr5	23726251	T-C	HET	INTERGENIC
SBS	Chr6	15553460	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g27470
SBS	Chr6	23042672	G-A	HET	INTERGENIC
SBS	Chr6	8712959	G-A	HET	INTERGENIC
SBS	Chr7	10483236	G-A	Homo	INTERGENIC
SBS	Chr7	13271855	C-T	Homo	INTERGENIC
SBS	Chr8	10244432	G-A	HET	INTERGENIC
SBS	Chr8	26568155	T-C	HET	INTERGENIC
SBS	Chr8	7744849	G-A	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2040349	2040353	4
Deletion	Chr1	3312874	3315206	2332	2
Deletion	Chr6	4214009	4214012	3
Deletion	Chr2	4647994	4647995	1
Deletion	Chr10	6740454	6740455	1
Deletion	Chr3	7333578	7333589	11
Deletion	Chr6	8927647	8927657	10
Deletion	Chr1	13172887	13172888	1
Deletion	Chr3	14556294	14556329	35
Deletion	Chr3	18215405	18215414	9
Deletion	Chr3	18300001	18428000	128000	19
Deletion	Chr7	18708336	18708343	7
Deletion	Chr12	19915787	19915799	12
Deletion	Chr1	19983252	19983253	1	LOC_Os01g36120
Deletion	Chr8	20191517	20191519	2
Deletion	Chr9	20231379	20231380	1
Deletion	Chr8	25434676	25434678	2
Deletion	Chr3	26766752	26766761	9
Deletion	Chr5	27762798	27762806	8
Deletion	Chr1	28471704	28471714	10
Deletion	Chr1	29168337	29168358	21
Deletion	Chr4	29823676	29823693	17	LOC_Os04g50010
Deletion	Chr4	34100214	34100220	6
Deletion	Chr1	35977553	35977555	2

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27134019	27134020	2	LOC_Os01g47470
Insertion	Chr1	35770112	35770113	2
Insertion	Chr10	18605262	18605321	60
Insertion	Chr10	2543903	2543935	33	LOC_Os10g05190
Insertion	Chr12	17141968	17141969	2
Insertion	Chr2	1506254	1506255	2
Insertion	Chr2	29632464	29632464	1
Insertion	Chr3	3505290	3505290	1
Insertion	Chr3	9783060	9783060	1
Insertion	Chr4	18853573	18853616	44
Insertion	Chr4	2305618	2305618	1
Insertion	Chr6	15988354	15988355	2
Insertion	Chr6	8981674	8981675	2
Insertion	Chr8	14445514	14445515	2
Insertion	Chr8	15137422	15137423	2
Insertion	Chr9	22474988	22475044	57
Insertion	Chr9	4781773	4781774	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2230406	2395465
Inversion	Chr3	19594721	19737436	2
Inversion	Chr3	19597153	19922450	LOC_Os03g35340
Inversion	Chr12	24848070	24917872

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6287691	Chr3	19597146	LOC_Os03g35340
Translocation	Chr5	6287695	Chr3	19594748	LOC_Os03g35340

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