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Mutant Information

Mutant Name	FN1565-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1565-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (20% Albino) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31300977	T-C	HET	INTERGENIC
SBS	Chr1	9134165	C-T	HET	INTRON
SBS	Chr10	13842581	C-A	HET	INTERGENIC
SBS	Chr11	10581486	G-T	HET	INTRON
SBS	Chr12	10092483	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g17620
SBS	Chr12	14409151	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	13871482	G-A	HET	INTERGENIC
SBS	Chr2	13965549	T-A	HET	INTERGENIC
SBS	Chr2	15211763	A-G	HET	INTRON
SBS	Chr3	1403813	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	1403814	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g03270
SBS	Chr3	24547225	C-T	HET	INTERGENIC
SBS	Chr4	13643676	C-T	HET	INTRON
SBS	Chr4	29559382	T-A	HET	SPLICE_SITE_REGION
SBS	Chr4	8623823	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	1056479	A-C	Homo	INTERGENIC
SBS	Chr5	17728207	C-A	HET	INTERGENIC
SBS	Chr5	7922188	T-C	HET	INTERGENIC
SBS	Chr5	9361426	A-T	HET	INTRON
SBS	Chr6	10714019	A-T	HET	SYNONYMOUS_CODING
SBS	Chr6	13421983	C-T	HET	INTRON
SBS	Chr6	1539342	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g03830
SBS	Chr6	15835133	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g27900
SBS	Chr6	26326080	A-G	HET	INTERGENIC
SBS	Chr6	27083846	A-T	HET	INTERGENIC
SBS	Chr6	7957747	G-A	HET	INTERGENIC
SBS	Chr7	11644610	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g20170
SBS	Chr7	18220433	G-T	HET	INTERGENIC
SBS	Chr7	26079906	T-C	HET	INTERGENIC
SBS	Chr7	27800586	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46550
SBS	Chr7	7296632	C-T	HET	INTERGENIC
SBS	Chr8	17862621	T-A	HET	INTERGENIC
SBS	Chr8	6618116	G-A	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	325308	325309	1
Deletion	Chr5	1418980	1418994	14	LOC_Os05g03410
Deletion	Chr4	3131103	3131118	15
Deletion	Chr5	3202191	3202217	26
Deletion	Chr5	3223267	3223268	1
Deletion	Chr8	6616602	6616621	19
Deletion	Chr5	8451850	8451851	1
Deletion	Chr9	9796427	9796430	3
Deletion	Chr6	10858551	10858555	4
Deletion	Chr6	13081288	13082914	1626	LOC_Os06g22510
Deletion	Chr7	13733594	13733595	1
Deletion	Chr9	15022001	15055000	33000	3
Deletion	Chr11	15339862	15339864	2
Deletion	Chr11	15774660	15774663	3	LOC_Os11g27410
Deletion	Chr7	16268550	16268578	28
Deletion	Chr8	16403001	16434000	31000	4
Deletion	Chr5	16704311	16704319	8	LOC_Os05g28520
Deletion	Chr1	18874130	18880574	6444	3
Deletion	Chr6	19598851	19598856	5
Deletion	Chr9	21604482	21604495	13
Deletion	Chr4	22571352	22571358	6
Deletion	Chr7	24084870	24084883	13
Deletion	Chr7	24161355	24161359	4
Deletion	Chr6	24778654	24778664	10
Deletion	Chr5	25149287	25149303	16
Deletion	Chr1	27025804	27026182	378
Deletion	Chr2	30406480	30406482	2
Deletion	Chr2	34769003	34769012	9

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	38799864	38799865	2
Insertion	Chr1	4909131	4909134	4	LOC_Os01g09570
Insertion	Chr1	5284523	5284524	2
Insertion	Chr10	19118966	19118966	1
Insertion	Chr11	22130900	22130929	30
Insertion	Chr11	22790210	22790211	2
Insertion	Chr12	3653299	3653302	4
Insertion	Chr2	15876877	15876878	2
Insertion	Chr3	25670560	25670560	1
Insertion	Chr3	35283026	35283026	1
Insertion	Chr5	14802562	14802562	1
Insertion	Chr7	14601802	14601802	1
Insertion	Chr7	15855178	15855183	6
Insertion	Chr7	208063	208064	2
Insertion	Chr7	27412774	27412774	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5256277	6432462	LOC_Os08g10920
Inversion	Chr5	6658731	7994713	LOC_Os05g11730
Inversion	Chr4	34962084	35161616	2
Inversion	Chr1	40896618	41008621	LOC_Os01g70860

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	19649004	Chr1	18880597	LOC_Os01g34250

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