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Mutant Information

Mutant Name	FN1602-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1602-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18845021	C-T	Homo	INTERGENIC
SBS	Chr1	24733844	C-T	HET	INTERGENIC
SBS	Chr1	26482514	G-A	HET	INTERGENIC
SBS	Chr10	20860785	G-T	Homo	INTERGENIC
SBS	Chr10	5617307	A-G	Homo	INTRON
SBS	Chr10	7074441	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	9894834	C-A	HET	INTERGENIC
SBS	Chr11	18576864	G-T	HET	INTERGENIC
SBS	Chr12	14259175	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g24870
SBS	Chr12	22453002	G-A	HET	INTERGENIC
SBS	Chr12	22455917	C-T	HET	INTERGENIC
SBS	Chr12	25116628	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g40590
SBS	Chr2	34076018	C-A	HET	UTR_3_PRIME
SBS	Chr3	25019319	C-A	HET	INTERGENIC
SBS	Chr5	15651639	C-T	Homo	INTERGENIC
SBS	Chr5	21101749	A-T	HET	INTERGENIC
SBS	Chr5	235655	C-T	HET	INTRON
SBS	Chr6	5681640	A-T	Homo	UTR_3_PRIME
SBS	Chr6	5913473	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g11280
SBS	Chr7	16776463	A-C	HET	INTERGENIC
SBS	Chr7	4959596	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	4959597	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g09400
SBS	Chr7	4959598	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g09400
SBS	Chr8	12372464	G-A	HET	INTERGENIC
SBS	Chr8	1785015	C-T	HET	INTRON
SBS	Chr8	19566291	C-T	HET	INTERGENIC
SBS	Chr8	2173213	C-T	HET	INTERGENIC
SBS	Chr8	22997370	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g36440
SBS	Chr8	22997371	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	15703674	G-A	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	158845	158873	28
Deletion	Chr9	679459	679481	22
Deletion	Chr5	2120575	2120626	51
Deletion	Chr12	4109996	4109997	1
Deletion	Chr12	4391342	4391345	3
Deletion	Chr6	6351935	6351951	16	LOC_Os06g11920
Deletion	Chr5	7582322	7582323	1
Deletion	Chr5	8561659	8561721	62	LOC_Os05g15070
Deletion	Chr9	8909530	8909534	4
Deletion	Chr1	9023509	9023511	2	LOC_Os01g16030
Deletion	Chr8	10015254	10015255	1
Deletion	Chr11	10188795	10188796	1
Deletion	Chr1	11692734	11692736	2
Deletion	Chr12	12120466	12120468	2
Deletion	Chr1	14795471	14795477	6
Deletion	Chr3	14861878	14861880	2
Deletion	Chr2	15356632	15356643	11
Deletion	Chr5	15568322	15568328	6
Deletion	Chr9	16282318	16282319	1
Deletion	Chr7	17210582	17210616	34
Deletion	Chr3	17795871	17797730	1859
Deletion	Chr2	18364040	18364052	12	LOC_Os02g30800
Deletion	Chr7	18427700	18427704	4
Deletion	Chr4	20012995	20012996	1
Deletion	Chr5	21256537	21256545	8
Deletion	Chr9	22245374	22245379	5
Deletion	Chr12	22400881	22400882	1
Deletion	Chr12	22937389	22937395	6
Deletion	Chr7	25655275	25655282	7
Deletion	Chr3	28918139	28918141	2
Deletion	Chr6	31137929	31137933	4
Deletion	Chr4	34357601	34357602	1
Deletion	Chr1	36834561	36834587	26
Deletion	Chr1	41758090	41758092	2

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	25200701	25200701	1
Insertion	Chr11	25904717	25904718	2
Insertion	Chr2	11916433	11916433	1
Insertion	Chr2	18371365	18371366	2
Insertion	Chr2	23639566	23639566	1
Insertion	Chr4	11173495	11173544	50	LOC_Os04g20054
Insertion	Chr4	6134887	6134958	72
Insertion	Chr5	29813952	29813952	1
Insertion	Chr7	2573181	2573211	31
Insertion	Chr9	8981681	8981683	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7535958	7536123	LOC_Os04g13510
Inversion	Chr7	16487925	16521720	2
Inversion	Chr2	26676506	26713034	LOC_Os02g44136
Inversion	Chr1	33543520	33543783

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3684651	Chr9	7178701
Translocation	Chr11	12580749	Chr8	22301638
Translocation	Chr2	17593767	Chr1	17520933	2
Translocation	Chr12	17843383	Chr10	5024981	LOC_Os10g09290
Translocation	Chr7	21194732	Chr3	17797725	LOC_Os07g35440
Translocation	Chr11	23699280	Chr4	29551823

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