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Mutant Information

Mutant Name	FN1634-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1634-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12885196	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g22920
SBS	Chr1	12885197	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g22920
SBS	Chr1	32783665	G-A	HET	START_GAINED	LOC_Os01g56800
SBS	Chr1	34856725	A-T	HET	INTERGENIC
SBS	Chr1	36757344	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63444
SBS	Chr10	15329998	A-T	HET	UTR_3_PRIME
SBS	Chr10	15906346	G-A	HET	INTERGENIC
SBS	Chr10	15906347	G-A	HET	INTERGENIC
SBS	Chr11	16678289	C-T	HET	INTERGENIC
SBS	Chr11	649603	A-G	HET	INTERGENIC
SBS	Chr2	17756787	C-T	HET	INTERGENIC
SBS	Chr2	27667797	A-G	HET	INTERGENIC
SBS	Chr2	29161015	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g47690
SBS	Chr2	33789179	T-A	HET	INTRON
SBS	Chr2	4252267	A-T	HET	INTERGENIC
SBS	Chr3	17224898	G-C	HET	INTERGENIC
SBS	Chr3	17762343	G-A	HET	INTERGENIC
SBS	Chr3	1844126	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04040
SBS	Chr4	1836036	T-A	HET	INTRON
SBS	Chr4	5384199	G-A	HET	INTERGENIC
SBS	Chr4	5920782	G-A	HET	INTRON
SBS	Chr4	6345537	G-A	HET	INTRON
SBS	Chr5	11988951	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g20430
SBS	Chr5	18978342	T-A	Homo	INTERGENIC
SBS	Chr5	19472537	G-C	Homo	INTRON
SBS	Chr5	23542626	C-T	Homo	INTERGENIC
SBS	Chr5	26631103	C-A	HET	SYNONYMOUS_CODING
SBS	Chr5	7208984	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g12560
SBS	Chr5	8950485	G-A	HET	INTERGENIC
SBS	Chr6	10472670	G-A	HET	INTERGENIC
SBS	Chr6	23037107	G-A	HET	INTERGENIC
SBS	Chr6	2804514	G-A	HET	SPLICE_SITE_REGION
SBS	Chr6	28435598	T-C	HET	INTRON
SBS	Chr6	29709042	C-T	Homo	INTERGENIC
SBS	Chr7	14340894	T-C	HET	INTERGENIC
SBS	Chr7	4771348	G-T	HET	INTERGENIC
SBS	Chr8	10751531	T-G	HET	INTERGENIC
SBS	Chr8	12285357	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	23108300	C-A	HET	INTERGENIC
SBS	Chr8	25696213	T-A	HET	INTRON
SBS	Chr9	2890704	T-C	HET	INTRON
SBS	Chr9	8107003	G-A	HET	INTERGENIC
SBS	Chr9	8510921	T-G	HET	UTR_3_PRIME

Deletions: 45

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	53848	53850	2
Deletion	Chr8	536100	536101	1
Deletion	Chr12	1249658	1249661	3
Deletion	Chr7	1319001	1411000	92000	21
Deletion	Chr3	1576025	1576038	13
Deletion	Chr3	1734737	1743739	9002	LOC_Os03g03860
Deletion	Chr11	2204136	2204150	14
Deletion	Chr7	3048001	3105000	57000	9
Deletion	Chr3	3560627	3566984	6357	2
Deletion	Chr9	3764679	3764691	12
Deletion	Chr9	4011896	4011898	2	LOC_Os09g07890
Deletion	Chr9	4772102	4772103	1
Deletion	Chr4	4774335	4774341	6
Deletion	Chr8	5180813	5189460	8647	2
Deletion	Chr8	5312461	5312463	2	LOC_Os08g09160
Deletion	Chr9	5973566	5973567	1	LOC_Os09g10890
Deletion	Chr3	6050504	6057752	7248	LOC_Os03g11614
Deletion	Chr4	8439565	8439566	1
Deletion	Chr3	9295058	9295062	4	LOC_Os03g16770
Deletion	Chr2	9443849	9443850	1
Deletion	Chr1	11019110	11019118	8
Deletion	Chr2	12213236	12213237	1
Deletion	Chr8	12666498	12666513	15
Deletion	Chr12	13229311	13229327	16
Deletion	Chr4	13598829	13598831	2
Deletion	Chr4	14515072	14515073	1
Deletion	Chr10	14827428	14827439	11
Deletion	Chr8	15048170	15048171	1
Deletion	Chr10	15906249	15906255	6
Deletion	Chr11	16315983	16315985	2
Deletion	Chr10	16419872	16419884	12
Deletion	Chr6	17335844	17335850	6
Deletion	Chr6	17499979	17499982	3
Deletion	Chr6	19227474	19227479	5	LOC_Os06g33030
Deletion	Chr1	19739872	19739881	9
Deletion	Chr1	19851610	19851611	1
Deletion	Chr4	22080967	22080973	6
Deletion	Chr11	24348487	24348500	13
Deletion	Chr3	24449554	24449555	1	LOC_Os03g43720
Deletion	Chr11	25833282	25833284	2
Deletion	Chr3	26522806	26522808	2
Deletion	Chr2	27390355	27390356	1
Deletion	Chr3	28517266	28517296	30
Deletion	Chr4	35212755	35212766	11
Deletion	Chr1	42914797	42914800	3

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	42913055	42913055	1
Insertion	Chr1	8434486	8434547	62
Insertion	Chr10	7497182	7497183	2
Insertion	Chr11	3168493	3168510	18
Insertion	Chr11	4878367	4878368	2
Insertion	Chr12	9729905	9729906	2
Insertion	Chr2	23649329	23649356	28
Insertion	Chr3	16289691	16289692	2
Insertion	Chr3	16854817	16854818	2
Insertion	Chr3	18369894	18369970	77
Insertion	Chr3	25392671	25392671	1
Insertion	Chr4	18779650	18779658	9	LOC_Os04g31400
Insertion	Chr4	26610764	26610764	1
Insertion	Chr4	30028690	30028693	4
Insertion	Chr4	9469462	9469462	1
Insertion	Chr5	16603496	16603513	18
Insertion	Chr5	29348402	29348402	1	LOC_Os05g51160
Insertion	Chr6	19505216	19505216	1
Insertion	Chr6	26612108	26612131	24
Insertion	Chr6	26943244	26943244	1	LOC_Os06g44620
Insertion	Chr7	8457698	8457709	12

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14322278	14626660	LOC_Os10g27170
Inversion	Chr10	14322317	14626669	LOC_Os10g27170
Inversion	Chr11	17399199	17877199

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	3524178	Chr1	629528
Translocation	Chr3	3527694	Chr1	629486	LOC_Os03g06940
Translocation	Chr8	5180827	Chr7	14210904	LOC_Os08g08910
Translocation	Chr8	5189457	Chr1	10897036	LOC_Os01g19270
Translocation	Chr8	5189504	Chr7	14210903
Translocation	Chr3	6050513	Chr2	1675802	LOC_Os02g03940
Translocation	Chr3	6057732	Chr2	1675808	2
Translocation	Chr7	14210902	Chr1	10896698	LOC_Os01g19270
Translocation	Chr4	22308947	Chr3	1734738	LOC_Os04g37430
Translocation	Chr4	23295106	Chr3	1743776	LOC_Os04g39170

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr3	1714089	3566935	1852846

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