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Mutant Information

Mutant Name	FN1656-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1656-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	786478	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	24433294	A-C	HET	INTRON
SBS	Chr2	16204891	A-T	HET	INTERGENIC
SBS	Chr2	16204892	A-T	HET	INTERGENIC
SBS	Chr2	29401125	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g48030
SBS	Chr3	2137997	C-G	Homo	INTERGENIC
SBS	Chr3	4735987	G-A	HET	INTERGENIC
SBS	Chr3	4802736	C-G	HET	INTERGENIC
SBS	Chr3	5511437	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g10780
SBS	Chr3	11963307	G-A	Homo	INTRON
SBS	Chr3	11963308	T-A	Homo	INTRON
SBS	Chr4	283620	C-T	HET	STOP_GAINED	LOC_Os04g01400
SBS	Chr4	5104950	T-G	HET	INTERGENIC
SBS	Chr4	8448669	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	24923572	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	27791301	A-G	HET	INTERGENIC
SBS	Chr4	27818116	A-C	HET	INTERGENIC
SBS	Chr5	1911547	G-C	Homo	INTERGENIC
SBS	Chr5	24397905	G-A	Homo	STOP_GAINED	LOC_Os05g41700
SBS	Chr6	28839041	G-A	HET	INTERGENIC
SBS	Chr8	24029328	C-T	HET	INTERGENIC
SBS	Chr10	264628	G-A	Homo	INTERGENIC
SBS	Chr10	1251520	T-C	HET	INTRON
SBS	Chr12	7965012	A-T	HET	INTERGENIC

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	658820	658831	11	LOC_Os11g02300
Deletion	Chr6	1138629	1138630	1	LOC_Os06g03080
Deletion	Chr12	1307178	1307179	1
Deletion	Chr11	1685396	1685405	9
Deletion	Chr5	2217585	2217589	4	LOC_Os05g04690
Deletion	Chr9	2319397	2319404	7
Deletion	Chr10	2320531	2330130	9599	LOC_Os10g04810
Deletion	Chr11	3833574	3833576	2
Deletion	Chr8	4646296	4646299	3
Deletion	Chr9	4743966	4743968	2
Deletion	Chr7	5214494	5214511	17
Deletion	Chr9	5589398	5589402	4
Deletion	Chr7	5707452	5707453	1	LOC_Os07g10550
Deletion	Chr4	6237038	6237079	41
Deletion	Chr4	7198004	7198005	1
Deletion	Chr1	8536920	8536923	3	LOC_Os01g15250
Deletion	Chr3	8571484	8571498	14	LOC_Os03g15560
Deletion	Chr9	8718997	8718999	2
Deletion	Chr3	9414817	9414820	3
Deletion	Chr9	10102964	10102965	1
Deletion	Chr2	10185657	10185669	12
Deletion	Chr12	10411675	10411676	1
Deletion	Chr8	14201794	14201803	9
Deletion	Chr4	14248770	14248773	3
Deletion	Chr8	14790001	14875000	85000	11
Deletion	Chr10	15427342	15427352	10	LOC_Os10g29660
Deletion	Chr4	16131940	16131944	4
Deletion	Chr4	17102396	17102397	1
Deletion	Chr10	18607453	18607454	1
Deletion	Chr2	19518317	19518331	14
Deletion	Chr3	19875001	19917000	42000	5
Deletion	Chr8	20947315	20947316	1	LOC_Os08g33540
Deletion	Chr8	22966125	22966132	7
Deletion	Chr11	23608179	23608180	1
Deletion	Chr8	24897129	24897138	9
Deletion	Chr12	27291929	27291930	1
Deletion	Chr4	30657067	30657070	3
Deletion	Chr3	36350257	36350260	3	LOC_Os03g64320
Deletion	Chr1	37862461	37862465	4

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	32100690	32100691	2
Insertion	Chr2	16996836	16996876	41
Insertion	Chr8	14823122	14823122	1
Insertion	Chr11	2087750	2087768	19
Insertion	Chr11	24750230	24750230	1
Insertion	Chr12	21283337	21283337	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12880107	13665754	LOC_Os04g22720
Inversion	Chr4	12880120	13665752	LOC_Os04g22720
Inversion	Chr7	13619588	14224617
Inversion	Chr7	13619621	14224697
Inversion	Chr5	21705756	28051528	LOC_Os05g37140
Inversion	Chr5	21706557	22207511	LOC_Os05g37140

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5829886	Chr1	11618352	LOC_Os01g20840
Translocation	Chr11	12007871	Chr7	12281530
Translocation	Chr12	13357022	Chr8	626798
Translocation	Chr8	15027507	Chr7	11295934
Translocation	Chr8	17948399	Chr7	9687590
Translocation	Chr10	19859685	Chr1	7956326	2
Translocation	Chr11	25331003	Chr2	2430966
Translocation	Chr11	27797888	Chr5	23590066	LOC_Os05g40160

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