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Mutant Information

Mutant Name	FN1669-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1669-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8088859	A-T	HET
SBS	Chr1	11086863	C-A	HET
SBS	Chr1	27979975	G-T	Homo
SBS	Chr2	2677785	C-T	Homo
SBS	Chr2	15428227	C-T	HET
SBS	Chr3	7557776	A-G	Homo
SBS	Chr3	9926848	G-A	Homo
SBS	Chr3	19367332	G-T	Homo
SBS	Chr3	35072705	G-T	HET
SBS	Chr4	7150768	A-T	HET
SBS	Chr4	7346744	C-T	HET
SBS	Chr4	32899185	G-T	HET
SBS	Chr4	33608480	G-T	HET
SBS	Chr5	27261187	G-T	HET
SBS	Chr7	25010996	G-A	HET
SBS	Chr8	7270493	A-T	Homo
SBS	Chr8	23088073	T-A	Homo
SBS	Chr10	10600041	G-T	Homo
SBS	Chr10	15398045	G-A	Homo
SBS	Chr11	11037880	C-T	Homo
SBS	Chr11	13740429	C-T	HET
SBS	Chr11	23229216	A-C	HET
SBS	Chr12	22929920	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37340
SBS	Chr12	23443526	G-T	HET
SBS	Chr12	24450866	G-C	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	3552401	3552402	1
Deletion	Chr4	4421001	4619000	197999	23
Deletion	Chr9	4486862	4486868	6
Deletion	Chr4	4629001	4748000	118999	20
Deletion	Chr1	9032805	9032806	1
Deletion	Chr10	15568932	15568948	16
Deletion	Chr8	15839272	15839285	13
Deletion	Chr1	17232530	17232531	1
Deletion	Chr9	17298477	17298478	1
Deletion	Chr5	20355402	20355404	2	LOC_Os05g34340
Deletion	Chr1	21207069	21207070	1
Deletion	Chr8	21467812	21467814	2	LOC_Os08g34240
Deletion	Chr2	23462995	23462996	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	2860482	2860483	2
Insertion	Chr4	14418717	14418717	1

Inversions: 24

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2108818	2109151	2
Inversion	Chr3	3278795	3279141
Inversion	Chr3	3462921	3463131	LOC_Os03g06830
Inversion	Chr1	3642688	3642943
Inversion	Chr7	4328513	4328727
Inversion	Chr10	9840597	9841208	LOC_Os10g19310
Inversion	Chr4	11026197	11026322
Inversion	Chr9	12234791	12235003
Inversion	Chr2	12545708	12545978	LOC_Os02g21130
Inversion	Chr3	12912746	12912881
Inversion	Chr11	14269426	14269642
Inversion	Chr10	17916850	17917250	LOC_Os10g33800
Inversion	Chr7	18305797	18305978
Inversion	Chr9	18761345	18761818	LOC_Os09g31200
Inversion	Chr10	19042382	19042566
Inversion	Chr10	21681890	21682213
Inversion	Chr10	22195985	22196273
Inversion	Chr1	22683747	22683911	LOC_Os01g40200
Inversion	Chr5	23693813	23693997	LOC_Os05g40320
Inversion	Chr2	24073780	24074064	LOC_Os02g39840
Inversion	Chr2	25008262	25008589	LOC_Os02g41680
Inversion	Chr4	32703254	32703780	2
Inversion	Chr1	37563750	37564037	LOC_Os01g64740
Inversion	Chr1	42422808	42423174	LOC_Os01g73150

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	12733718	Chr8	9303483	2
Translocation	Chr4	32040721	Chr3	31809571

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